BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0280.p
         (702 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311480|ref|YP_003775572.1| chromosome segregation SMC ATPa...  1299   0.0  

>gi|300311480|ref|YP_003775572.1| chromosome segregation SMC ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 1176

 Score = 1299 bits (3361), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 631/639 (98%), Positives = 636/639 (99%)

Query: 1   VGVVGPNGCGKSNIIDAVRWVLGESKASELRGESMQDVIFNGSTHRKPAGRASVELVFDN 60
           VGVVGPNGCGKSNIIDAVRWVLGESKASELRGESMQDVIFNGSTHRKPAGRASVELVFDN
Sbjct: 27  VGVVGPNGCGKSNIIDAVRWVLGESKASELRGESMQDVIFNGSTHRKPAGRASVELVFDN 86

Query: 61  SAGKAAGQWGQYAEIAVKRTLTRDGTSSYYINNQSVRRRDIQDIFLGTGLGPRAYAIIGQ 120
           SAGKAAGQWGQYAEIAVKRTLTRDGTSSYYINNQSVRRRDIQDIFLGTGLGPRAYAIIGQ
Sbjct: 87  SAGKAAGQWGQYAEIAVKRTLTRDGTSSYYINNQSVRRRDIQDIFLGTGLGPRAYAIIGQ 146

Query: 121 GMISRIIEARPEELRIFLEEAAGVSKYKERRRETENRLHDTTENLTRLEDILRELNANLE 180
           GMISRIIEARPEELRIFLEEAAGVSKYKERRRETENRLHDTTENLTRLEDILRELN NLE
Sbjct: 147 GMISRIIEARPEELRIFLEEAAGVSKYKERRRETENRLHDTTENLTRLEDILRELNTNLE 206

Query: 181 KLEAQAAVAKKFHELQNDQEEKQKLLWLLRKNEAKAEQERFFKEIERAQIDLEEQTAKLR 240
           KLEAQAAVAKKFHELQNDQEEKQKLLWLLRKNEAKAEQERFFKEIERAQIDLEEQTAKLR
Sbjct: 207 KLEAQAAVAKKFHELQNDQEEKQKLLWLLRKNEAKAEQERFFKEIERAQIDLEEQTAKLR 266

Query: 241 HVETELEHMRQAHYAAGDRLHQAQGHLYQTNSEIGSLEAQIKFVIESRNRLQAQLNSLGA 300
           HVETELEHMRQAHYAAGDRLHQAQGHLYQTNSEIGSLEAQIKFVIESRNRLQAQLNSLGA
Sbjct: 267 HVETELEHMRQAHYAAGDRLHQAQGHLYQTNSEIGSLEAQIKFVIESRNRLQAQLNSLGA 326

Query: 301 QRDQWQRQGTQQQEELAEAEIQLEEFGMRVEQAQHAVQDTSDRLPSLESAWRESQVKTTE 360
           QRDQWQRQGTQQQEELAEAEIQLEEFGMRVEQAQHAVQDTSDRLPSLE+AWRESQVKTTE
Sbjct: 327 QRDQWQRQGTQQQEELAEAEIQLEEFGMRVEQAQHAVQDTSDRLPSLEAAWRESQVKTTE 386

Query: 361 SRGKIMQVQQQIELQSTHQRNASNILSGLAVRRERLLQEKSGMALPDETHLSNLRMQLEE 420
           SRGKIMQVQQQIELQSTHQRNASNILSGLA RRERL+QEK+GMA+PDE HLSNLRMQLEE
Sbjct: 387 SRGKIMQVQQQIELQSTHQRNASNILSGLAARRERLMQEKNGMAMPDEVHLSNLRMQLEE 446

Query: 421 KQASLEEASMYLEEAQEQLPRLEEERRTAQELVSKETSANAQLEARLTALKQLQESVQAQ 480
           KQASLEEASMYLEEAQEQLPRLEEERRTAQELVSKETSANAQLEARLTALKQLQESVQAQ
Sbjct: 447 KQASLEEASMYLEEAQEQLPRLEEERRTAQELVSKETSANAQLEARLTALKQLQESVQAQ 506

Query: 481 GKVQPWLEKHGLAELPRLWQKLHIESGWETALEAVLRERMSALEMSNLDWAKAFFSDAPP 540
           GKVQPWLEKHGLAELPRLWQKLHIESGWETALEAVLRERMSALEMSNLDWAKAFFSDAPP
Sbjct: 507 GKVQPWLEKHGLAELPRLWQKLHIESGWETALEAVLRERMSALEMSNLDWAKAFFSDAPP 566

Query: 541 AKLALYAPNAGLAQPEAQPVAGLKPFVTLLQLNDPGLRALMNDWLNHIYIADDTATAFAE 600
           AKLALYAPNAGLAQPEAQPVAGLKPFVTLLQLNDPGLRALMNDWLNHIYIADDTATAFAE
Sbjct: 567 AKLALYAPNAGLAQPEAQPVAGLKPFVTLLQLNDPGLRALMNDWLNHIYIADDTATAFAE 626

Query: 601 RAKLPLGGLFVTRQGHVVSNASVRFYASDSEQDGMLARQ 639
           RAKLPLGGLFVTRQGHVVSN+SVRFYASDSEQDGMLARQ
Sbjct: 627 RAKLPLGGLFVTRQGHVVSNSSVRFYASDSEQDGMLARQ 665


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.128    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,902,757
Number of extensions: 73187
Number of successful extensions: 479
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 471
Number of HSP's successfully gapped: 1
Length of query: 702
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 610
Effective length of database: 1,184,250
Effective search space: 722392500
Effective search space used: 722392500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 134 (56.2 bits)