BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0279.p
         (452 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311480|ref|YP_003775572.1| chromosome segregation SMC ATPa...   896   0.0  

>gi|300311480|ref|YP_003775572.1| chromosome segregation SMC ATPase
            [Herbaspirillum seropedicae SmR1]
          Length = 1176

 Score =  896 bits (2315), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/452 (99%), Positives = 450/452 (99%)

Query: 1    MKLAEVQERFNQRSTQIATDLEEIGMQEAEQQQVQAESEARFEELDIELAELQEQHENGQ 60
            MKLAEVQERFNQRSTQIATDLEEI MQEAEQQQVQAESEARFEELDIELAELQEQHENGQ
Sbjct: 725  MKLAEVQERFNQRSTQIATDLEEISMQEAEQQQVQAESEARFEELDIELAELQEQHENGQ 784

Query: 61   TDYLNKEQQLNDARTRLRELERAAQETEFAEKSHRNKIEELKRGIATALEQAAQLFASMQ 120
            TDYLNKEQQLNDARTRLRELERAAQETEFAEKSHRNKIEELKRGIATALEQAAQLFASMQ
Sbjct: 785  TDYLNKEQQLNDARTRLRELERAAQETEFAEKSHRNKIEELKRGIATALEQAAQLFASMQ 844

Query: 121  QGSLELESLDDQAAQAGLQELLDRRSEQERALADARHELDQLSQQLRSHEESRMQAERSL 180
            QGSLELESLDDQAAQAGLQELLDRRSEQERALADARHELDQLSQQLRSHEESRMQAERSL
Sbjct: 845  QGSLELESLDDQAAQAGLQELLDRRSEQERALADARHELDQLSQQLRSHEESRMQAERSL 904

Query: 181  QPQRDRITELQLKEQAARLNQEQFSEALAQTQADEAALSEKLTSDMRPSYLQGEVTRLTN 240
            QPQRDRITELQLKEQAARLNQEQFSEALAQTQADEAALSEKLTSDMRPSYLQGEVTRLTN
Sbjct: 905  QPQRDRITELQLKEQAARLNQEQFSEALAQTQADEAALSEKLTSDMRPSYLQGEVTRLTN 964

Query: 241  AIAALGAVNLAALDELATASERKHFLDAQHADLNEAITTLQDAIHKIDMETRDLLQDTFD 300
            AIAALGAVNLAALDELATASERKHFLDAQHADLNEAITTLQDAIHKIDMETRDLLQDTFD
Sbjct: 965  AIAALGAVNLAALDELATASERKHFLDAQHADLNEAITTLQDAIHKIDMETRDLLQDTFD 1024

Query: 301  KVNHHFSELFPVLFGGGQAKLIMTGDEILDSGVQVMAQPPGKKNATIHLLSGGEKALTAT 360
            KVN HFSELFPVLFGGGQAKLIMTGDEILDSGVQVMAQPPGKKNATIHLLSGGEKALTAT
Sbjct: 1025 KVNRHFSELFPVLFGGGQAKLIMTGDEILDSGVQVMAQPPGKKNATIHLLSGGEKALTAT 1084

Query: 361  ALVFSMFQLNPAPFCLLDEVDAPLDDANTERFANMVKRMSEYTQFLFISHNKIAMEMAQQ 420
            ALVFSMFQLNPAPFCLLDEVDAPLDDANTERFANMVKRMS++TQFLFISHNKIAMEMAQQ
Sbjct: 1085 ALVFSMFQLNPAPFCLLDEVDAPLDDANTERFANMVKRMSDHTQFLFISHNKIAMEMAQQ 1144

Query: 421  LIGVTMQEQGVSRIVAVDMESAANFSSAEQAA 452
            LIGVTMQEQGVSRIVAVDMESAANFSSAEQAA
Sbjct: 1145 LIGVTMQEQGVSRIVAVDMESAANFSSAEQAA 1176


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.126    0.327 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,070,093
Number of extensions: 38883
Number of successful extensions: 278
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 284
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 364
Effective length of database: 1,203,190
Effective search space: 437961160
Effective search space used: 437961160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 132 (55.5 bits)