BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0278.p
         (446 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311481|ref|YP_003775573.1| transmembrane protein [Herbaspi...   739   0.0  

>gi|300311481|ref|YP_003775573.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 441

 Score =  739 bits (1908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/446 (84%), Positives = 398/446 (89%), Gaps = 5/446 (1%)

Query: 1   MMMDLQTSLIILGGVFVAGVITYNKWQEHKARKTVERAFSSSHDDVLMSPDEPAATAEPV 60
           MMMDLQTSLIILGGVFVAGVI+YNKWQEHKARKTVERAFSSSHDDVLMSPDE A   EP 
Sbjct: 1   MMMDLQTSLIILGGVFVAGVISYNKWQEHKARKTVERAFSSSHDDVLMSPDEDAPLVEPT 60

Query: 61  FAPPVADRTAPAPRMAEPTLEPDAGRAEPSFYDLPERKPVPAPVKAYQEQAEFEPREPFL 120
            AP  A    P    AE  +  +  RAEPSFYD PERKPV APVKAY +QAEFEPREPFL
Sbjct: 61  LAPAAAPVAEPRVEPAEAAVTGE--RAEPSFYDAPERKPVSAPVKAYLDQAEFEPREPFL 118

Query: 121 GEPPVSTAAPAGAAADEAVLGEAMAQAPQSTVAQVIAGAEEQGDTVPAFTPPPEMQARLA 180
           G+ P++     G   D A+  E +AQAPQSTVAQVIAGA++  +T PAF PPPEMQARLA
Sbjct: 119 GDAPMAAPTQPG---DAALTDEVLAQAPQSTVAQVIAGAQDPVETAPAFAPPPEMQARLA 175

Query: 181 PKRELPVDELIDCNIPIALENPLRGDKLLPMLQGLRHVGNKPVHFIGRTTDGDWEAIAHG 240
           PKRELPVDELIDCNIPIAL+NPLRGDKLLP+LQ LRHVGNKPVHFIGRT +G WEAIAHG
Sbjct: 176 PKRELPVDELIDCNIPIALDNPLRGDKLLPLLQNLRHVGNKPVHFIGRTLEGQWEAIAHG 235

Query: 241 SIYNALLAGAQLANRSNAINEIEYSELVMRLRDLTDSLSGEPELPDMPDVIRTAQALHQF 300
            +YNALLAGAQLANRSNA+NEIEYSELVMRLRDLTDSLSGEPELPDMPDVIRTAQALHQF
Sbjct: 236 GVYNALLAGAQLANRSNALNEIEYSELVMRLRDLTDSLSGEPELPDMPDVIRTAQALHQF 295

Query: 301 IIDHDAQLSVNVRSQGAPWSLATLLAALTRQGFDRRTEGYLVMQDGEGEVLFALSTNATP 360
           I DHDAQLSVNVRSQGAPWSLATLLAALTRQGFDRRTEGYLVMQDGEGEVLFALSTNATP
Sbjct: 296 IADHDAQLSVNVRSQGAPWSLATLLAALTRQGFDRRTEGYLVMQDGEGEVLFALSTNATP 355

Query: 361 TDETTDRLTLLLDVPRVAPSRDGYGALVACAKSLSARLGGVIVDDSDQPLTDEALSDIAE 420
           TDETTDRLTLLLDVPRV+P+RDGYGALVACA+SL+ RLGGVIVDDSDQPL+DEALSDIAE
Sbjct: 356 TDETTDRLTLLLDVPRVSPARDGYGALVACARSLAQRLGGVIVDDSDQPLSDEALSDIAE 415

Query: 421 QVAAFYSAMESAEIPAGSTRALRLFS 446
           QVAAFYSAMESAEIPAGSTRALRLFS
Sbjct: 416 QVAAFYSAMESAEIPAGSTRALRLFS 441


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.132    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,386,400
Number of extensions: 59013
Number of successful extensions: 301
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 299
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 358
Effective length of database: 1,203,190
Effective search space: 430742020
Effective search space used: 430742020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)