BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0275.p
         (178 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311484|ref|YP_003775576.1| N-formylmethionyl-tRNA deformyl...   332   8e-93
gi|300313962|ref|YP_003778054.1| polypeptide deformylase [Herbas...    92   3e-20

>gi|300311484|ref|YP_003775576.1| N-formylmethionyl-tRNA
           deformylase/polypeptide deformylase [Herbaspirillum
           seropedicae SmR1]
          Length = 178

 Score =  332 bits (852), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 160/178 (89%), Positives = 173/178 (97%)

Query: 1   MAIREILKMGDPRLLRQAQPVTQFGTPELAQLVDDMFETMRAVNGAGLAAPQIGVDLQLV 60
           MAIREILKMGDPRLLRQAQPVT+FGTPELA+LVDDMF+TMRAVNGAGLAAPQIGVDLQLV
Sbjct: 1   MAIREILKMGDPRLLRQAQPVTEFGTPELARLVDDMFQTMRAVNGAGLAAPQIGVDLQLV 60

Query: 61  IFGFGHNQRYPEAPAVPETVLINPVLTPLSDEEEEGWEGCLSVPGMRGVVPRWSRLRYQG 120
           IFGFG NQRYP+AP VPETVLINPVLTPLS++EEEGWEGCLSVPGMRGVVPRWSRLRYQG
Sbjct: 61  IFGFGQNQRYPDAPPVPETVLINPVLTPLSEQEEEGWEGCLSVPGMRGVVPRWSRLRYQG 120

Query: 121 LDLHGNEIDRTVDGFHARVVQHECDHLQGILYPMRIRDFRQFGFTEVLFPDLDPNQDD 178
           +D +G  IDR+V+GFHARVVQHECDHLQGILYPMRIRDFR+FGFTEVLFP+LDP+QDD
Sbjct: 121 VDQNGEPIDRSVEGFHARVVQHECDHLQGILYPMRIRDFRRFGFTEVLFPELDPSQDD 178


>gi|300313962|ref|YP_003778054.1| polypeptide deformylase
           [Herbaspirillum seropedicae SmR1]
          Length = 172

 Score = 91.7 bits (226), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/152 (37%), Positives = 82/152 (53%), Gaps = 8/152 (5%)

Query: 1   MAIREILKMGDPRLLRQAQPVTQFGTPELAQLVDDMFETMRAVNGAGLAAPQIGVDLQLV 60
           MA+  IL+  DPRL + A PVT F    + +LV DM ETM A  G GLAA Q+ V  Q+V
Sbjct: 1   MALLNILRYPDPRLHKIAAPVTVFDE-RIKKLVADMAETMYAAPGVGLAATQVDVHEQVV 59

Query: 61  IFGFGHNQRYPEAPAVPETVLINPVLTPLSDEEEEGWEGCLSVPGMRGVVPRWSRLRYQG 120
           +     + +  +       V INP +   S+++    EGCLSVPG+   V R +R++ + 
Sbjct: 60  VIDVSDDGKNLQ-------VFINPEIVWASEDKRVYDEGCLSVPGIYDGVERPARVKVRA 112

Query: 121 LDLHGNEIDRTVDGFHARVVQHECDHLQGILY 152
            D  G   +   D   A  +QHE DHL+G ++
Sbjct: 113 FDADGKAFEVDADELLAVCIQHEMDHLKGKVF 144


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.143    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 650,592
Number of extensions: 29296
Number of successful extensions: 58
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 2
Length of query: 178
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 99
Effective length of database: 1,245,805
Effective search space: 123334695
Effective search space used: 123334695
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)