BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0274.p (774 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311485|ref|YP_003775577.1| cyanophycin synthetase [Herbasp... 1480 0.0 gi|300311486|ref|YP_003775578.1| cyanophycin synthetase [Herbasp... 501 e-142 >gi|300311485|ref|YP_003775577.1| cyanophycin synthetase [Herbaspirillum seropedicae SmR1] Length = 857 Score = 1480 bits (3831), Expect = 0.0, Method: Compositional matrix adjust. Identities = 750/774 (96%), Positives = 764/774 (98%) Query: 1 VTFTRTVSTVETGIYQVVVEYSEEEVGRLAFDLALELVRAAQADTPFDLTGALARIRELD 60 VTF+RTVSTVETGIYQVVVEYSEEEVGRLAFDLALELVRAAQAD PFDLT L RIRELD Sbjct: 84 VTFSRTVSTVETGIYQVVVEYSEEEVGRLAFDLALELVRAAQADAPFDLTATLTRIRELD 143 Query: 61 EDVRLGPSTGSIVNAAIKRGIPYRRLTQGSMVQFGWGSRQKRIQAAETSNTSAIAESIAQ 120 EDVRLGPSTGSIVNAAIKRGIP+RRLTQGSMVQFGWGSRQKRIQAAETSNTSAIAESIAQ Sbjct: 144 EDVRLGPSTGSIVNAAIKRGIPFRRLTQGSMVQFGWGSRQKRIQAAETSNTSAIAESIAQ 203 Query: 121 DKDLTKMLLHAAGVPVPNGRVVETVEDALKAAEEIGSAVVIKPLDGNQGKGVAVNISTPE 180 DKDLTKMLLHAAGVPVPNGRVVETVEDALKAAEEIGSAVVIKPLDGNQGKGVAVNISTPE Sbjct: 204 DKDLTKMLLHAAGVPVPNGRVVETVEDALKAAEEIGSAVVIKPLDGNQGKGVAVNISTPE 263 Query: 181 QITRAFNNAALISDEVIVERYLPGHDFRLLVIGKTLVAAARRDPPQVIGDGVHTIRQLID 240 QITRAFNNAALISDEVIVERYLPGHDFRLLVIGKTLVAAARRDPPQVIGDGVHTIRQLID Sbjct: 264 QITRAFNNAALISDEVIVERYLPGHDFRLLVIGKTLVAAARRDPPQVIGDGVHTIRQLID 323 Query: 241 QVNADPLRGDGHATSLTKIRLDDIALSVLSGQNLDPEAIPAQGVRVVLRNNANLSTGGTA 300 QVNADPLRGDGHATSLTKIRLDDIALSVLSGQNLDPEAIPAQGVRVVLRNNANLSTGGTA Sbjct: 324 QVNADPLRGDGHATSLTKIRLDDIALSVLSGQNLDPEAIPAQGVRVVLRNNANLSTGGTA 383 Query: 301 TDVTDDVHPDVAARAIAAAQMVGLDICGVDVVCNSVHMSLEEQGGGIVEVNAAPGLRMHL 360 TDVTDDVHPDVAARAIAAAQMVGLDICGVDVVCNSVHMSLEEQGGGIVEVNAAPGLRMHL Sbjct: 384 TDVTDDVHPDVAARAIAAAQMVGLDICGVDVVCNSVHMSLEEQGGGIVEVNAAPGLRMHL 443 Query: 361 SPSYGKARDVGEAIISTMYDDGDDGRIPVVAVAGTNGKTTTVRLITHLLAKTGLRVGMTN 420 SPSYGKARDVGEAI+STMY+DGDDGRIPVVAVAGTNGKTTTVRLITHLLAKTGLRVGMTN Sbjct: 444 SPSYGKARDVGEAIVSTMYEDGDDGRIPVVAVAGTNGKTTTVRLITHLLAKTGLRVGMTN 503 Query: 421 TDGVYIDGQRTDTGDCSGPRSARNVLFHPDVDAAVLETARGGVLREGLGFDRCAVAVVTN 480 TDGVYIDGQRTDTGDCSGPRSARNVLFHPDVDAAVLETARGGVLREGLGFDRCAVAVVTN Sbjct: 504 TDGVYIDGQRTDTGDCSGPRSARNVLFHPDVDAAVLETARGGVLREGLGFDRCAVAVVTN 563 Query: 481 IGMGDHLGLSYISTVEDLAVVKRVIVENVAPTGTAVLNAADPMVSKMAASCPGSVTFFAL 540 IGMGDHLGLSYISTVEDLAVVKRVIVENVAPTGTAVLNAADPMV+KMAASCPG+VTFFAL Sbjct: 564 IGMGDHLGLSYISTVEDLAVVKRVIVENVAPTGTAVLNAADPMVAKMAASCPGAVTFFAL 623 Query: 541 DPTHPIMATHRAQGHRIVYQDGDAIVAAQGTFEKRLKLSGIPLTRSGAIGFQVENVMASV 600 DPTHPIMATHRAQGHRIVY+DGDAIVAAQG+FEKRLKLSGIPLTR+GAIGFQVENVMASV Sbjct: 624 DPTHPIMATHRAQGHRIVYRDGDAIVAAQGSFEKRLKLSGIPLTRAGAIGFQVENVMASV 683 Query: 601 GAAWALNLDWEQITGALASFISDSGTAPGRFNLFDYKGATLIADYGHNPDAIQALIKAVD 660 GAAWALNLDWEQITGALASFISDSGTAPGRFNLFDYKGATLIADYGHNPDAIQALIKAVD Sbjct: 684 GAAWALNLDWEQITGALASFISDSGTAPGRFNLFDYKGATLIADYGHNPDAIQALIKAVD 743 Query: 661 SLPAKRRSVVISGAGDRRDVDITRQTELLGDAFDEVVLYQDQCQRGREDGEVIALLRQGL 720 S+PAKRRSVVISGAGDRRDVDITRQTELLGDAFDEVVLYQDQCQRGREDGEVIALLRQGL Sbjct: 744 SMPAKRRSVVISGAGDRRDVDITRQTELLGDAFDEVVLYQDQCQRGREDGEVIALLRQGL 803 Query: 721 EGAKRTKDVKEINGEFVAIDTALATLQPGDLCLILIDQVEEALAHIDQRVKENA 774 A RT DVKEINGEF+AIDTAL +LQPGDLCLILIDQVEEALAHID RVKE++ Sbjct: 804 SKASRTSDVKEINGEFLAIDTALGSLQPGDLCLILIDQVEEALAHIDTRVKESS 857 >gi|300311486|ref|YP_003775578.1| cyanophycin synthetase [Herbaspirillum seropedicae SmR1] Length = 732 Score = 501 bits (1289), Expect = e-142, Method: Compositional matrix adjust. Identities = 284/624 (45%), Positives = 395/624 (63%), Gaps = 13/624 (2%) Query: 3 FTRTVSTVETGIYQVVVEYSEEEVGRLAFDLALELVRAAQADTPFDLTGALARIRELDED 62 F + T G+Y+VVV E V R A A +LV AA D P+DL L+++R + + Sbjct: 99 FGKARETNVRGVYKVVVRARHETVTRAALYAARDLVMAAIEDRPYDLDATLSKLRRMVDR 158 Query: 63 VRLGPSTGSIVNAAIKRGIPYRRLTQGSMVQFGWGSRQKRIQAAETSNTSAIAESIAQDK 122 + LGPST IV+AA +R IP RL++G++VQ G G + +RI AE+ TSAIAE I++DK Sbjct: 159 LCLGPSTACIVDAADERRIPTIRLSEGNLVQLGHGCKSRRIWTAESDQTSAIAEGISRDK 218 Query: 123 DLTKMLLHAAGVPVPNGRVVETVEDALKAAEEIGSAVVIKPLDGNQGKGVAVNISTPEQI 182 DLTK LL GVPVP GR+VE+ EDA +AA++IG VV+KP D N G+GV ++++T E+I Sbjct: 219 DLTKSLLETCGVPVPEGRLVESPEDAWEAAQDIGLPVVVKPCDANHGRGVFIDLNTREEI 278 Query: 183 TRAFNNAALISDEVIVERYLPGHDFRLLVIGKTLVAAARRDPPQVIGDGVHTIRQLIDQV 242 A+ A V+VER++PG + RLL++G L AAAR +P ++GDG T++ L+D++ Sbjct: 279 ETAYKVALEEGSGVLVERFVPGLEHRLLIVGGKLAAAARGEPIFIVGDGKSTVQDLLDEL 338 Query: 243 NADPLRG--DGHATSLTKIRLDDIALSVLSGQNLDPEAIPAQGVRVVLRNNANLSTGGTA 300 N DP RG + H + + A+ L QNL E++PA G R++L N N+S Sbjct: 339 NRDPRRGLLEEHLLDPVLLEREPAAVLELQRQNLTTESVPAAGRRILLLRNGNVS----- 393 Query: 301 TDVTDDVHPDVAARAIAAAQMVGLDICGVDVVCNSVHMSLEEQGGGIVEVNAAPGLRMHL 360 +D+TD VHP VAA A AA++VGLDI GVD+V + L++QGG IVEVNA PGL MHL Sbjct: 394 SDITDLVHPSVAAAASLAARIVGLDIAGVDIVAEDISRPLQDQGGAIVEVNAGPGLLMHL 453 Query: 361 SPSYGKARDVGEAIISTMYDDGDDGRIPVVAVAGTNGKTTTVRLITHLLAKTGLRVGMTN 420 PS GK R VGEAII ++ ++GRIP+V V GT+GKTT RLI ++ +G VG+ Sbjct: 454 KPSDGKPRPVGEAIIDNLFGPEENGRIPIVGVTGTHGKTTIARLIARIVHLSGKHVGLAC 513 Query: 421 TDGVYIDGQRTDTGDCSGPRSARNVLFHPDVDAAVLETARGGVLREGLGFDRCAVAVVTN 480 +G+Y ++ + G+ + +A VL + V+AAV E +L EGL +DRC V VV N Sbjct: 514 GEGLYFGERQIERGNRANWDAAHRVLLNRAVEAAVFENGSAAILAEGLAYDRCLVGVVAN 573 Query: 481 IGMGDHLGLSYISTVEDLAV-VKRVIVENVAPTGTAVLNAADPMVSKMAASCPGSVTFFA 539 I D L YI E +A VKR V+ V P G AVLNA DP+V+ MA C G V FF+ Sbjct: 574 IDPNDSLPEFYIENAEQIATKVKRTQVDLVLPDGAAVLNADDPLVADMAQLCDGEVIFFS 633 Query: 540 LDPTHPIMATHRAQGHRIVYQDGDAIVAAQGTFEKRLKLS---GIPLTRSGAIGFQVENV 596 DP ++A+H +G R V+ G ++ A+G E++ K+S IPLT +GA+ +QVENV Sbjct: 634 TDPASELVASHLKEGGRAVFLRGGDLIQAEG--ERQCKVSSVDAIPLTENGAVAYQVENV 691 Query: 597 MASVGAAWALNLDWEQITGALASF 620 +A+VGAAWAL + E I + F Sbjct: 692 LAAVGAAWALGISPEVIRAGIELF 715 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.135 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,384,186 Number of extensions: 105575 Number of successful extensions: 397 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 391 Number of HSP's successfully gapped: 2 Length of query: 774 Length of database: 1,619,870 Length adjustment: 93 Effective length of query: 681 Effective length of database: 1,179,515 Effective search space: 803249715 Effective search space used: 803249715 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 134 (56.2 bits)