BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0273.p (836 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311486|ref|YP_003775578.1| cyanophycin synthetase [Herbasp... 1135 0.0 gi|300311485|ref|YP_003775577.1| cyanophycin synthetase [Herbasp... 403 e-113 >gi|300311486|ref|YP_003775578.1| cyanophycin synthetase [Herbaspirillum seropedicae SmR1] Length = 732 Score = 1135 bits (2935), Expect = 0.0, Method: Compositional matrix adjust. Identities = 570/591 (96%), Positives = 582/591 (98%) Query: 1 MKNIEFLRFLNLKGPNIWTYRSALEVWIDIGELEDFPSNTIPGFVDRLTTWLPTLIEHRC 60 MKNIEFLRFLNLKGPNIWTYRSALEVWIDIGELEDFPSNTIPGF DRLTTWLPTLIEHRC Sbjct: 1 MKNIEFLRFLNLKGPNIWTYRSALEVWIDIGELEDFPSNTIPGFPDRLTTWLPTLIEHRC 60 Query: 61 SYEERGGFVRRLHEGTWPGHILEHVTLELQNLAGLPGGFGKARETNVRGVYKVVVRARHE 120 SYEERGGFVRRLHEGTWPGHILEHVTLELQNLAGLPGGFGKARETNVRGVYKVVVRARHE Sbjct: 61 SYEERGGFVRRLHEGTWPGHILEHVTLELQNLAGLPGGFGKARETNVRGVYKVVVRARHE 120 Query: 121 TVTRAALFAARDLVMAAMENQPYDLDTTLRKLRRMVDRLCLGPSTACIVDAADERRIPTI 180 TVTRAAL+AARDLVMAA+E++PYDLD TL KLRRMVDRLCLGPSTACIVDAADERRIPTI Sbjct: 121 TVTRAALYAARDLVMAAIEDRPYDLDATLSKLRRMVDRLCLGPSTACIVDAADERRIPTI 180 Query: 181 RLSEGNLVQLGHGCKSRRIWTAESDQTGAIAEGISRDKDLTKSLLETCGVPVPEGRLVDS 240 RLSEGNLVQLGHGCKSRRIWTAESDQT AIAEGISRDKDLTKSLLETCGVPVPEGRLV+S Sbjct: 181 RLSEGNLVQLGHGCKSRRIWTAESDQTSAIAEGISRDKDLTKSLLETCGVPVPEGRLVES 240 Query: 241 PADAWDAAQDIGLPVVVKPCDANHGRGVFIDLNTREEIETAYKVALEEGSGVLVERFVPG 300 P DAW+AAQDIGLPVVVKPCDANHGRGVFIDLNTREEIETAYKVALEEGSGVLVERFVPG Sbjct: 241 PEDAWEAAQDIGLPVVVKPCDANHGRGVFIDLNTREEIETAYKVALEEGSGVLVERFVPG 300 Query: 301 LEHRLLIVGGKLAAAARGEPIFIVGDGKSTVQDLLDELNRDPRRGLLEEHLLDPVLLDRE 360 LEHRLLIVGGKLAAAARGEPIFIVGDGKSTVQDLLDELNRDPRRGLLEEHLLDPVLL+RE Sbjct: 301 LEHRLLIVGGKLAAAARGEPIFIVGDGKSTVQDLLDELNRDPRRGLLEEHLLDPVLLERE 360 Query: 361 PAAVLELQRQNLTTESVPAAGRRILLLRNGNVSSDITDLVHPSVAAAASLAARIVGLDIA 420 PAAVLELQRQNLTTESVPAAGRRILLLRNGNVSSDITDLVHPSVAAAASLAARIVGLDIA Sbjct: 361 PAAVLELQRQNLTTESVPAAGRRILLLRNGNVSSDITDLVHPSVAAAASLAARIVGLDIA 420 Query: 421 GVDIVAEDISRPLQDQGGAIVEVNAGPGLLMHLKPSDGKPRPVGEAIIDNLFGPEENGRI 480 GVDIVAEDISRPLQDQGGAIVEVNAGPGLLMHLKPSDGKPRPVGEAIIDNLFGPEENGRI Sbjct: 421 GVDIVAEDISRPLQDQGGAIVEVNAGPGLLMHLKPSDGKPRPVGEAIIDNLFGPEENGRI 480 Query: 481 PVVGVTGTHGKTTISRLIARIVHLSGKHVGLACGEGLYFDERLVERGNRATWEAAHRVLL 540 P+VGVTGTHGKTTI+RLIARIVHLSGKHVGLACGEGLYF ER +ERGNRA W+AAHRVLL Sbjct: 481 PIVGVTGTHGKTTIARLIARIVHLSGKHVGLACGEGLYFGERQIERGNRANWDAAHRVLL 540 Query: 541 NRAVEAAVFENGSAAILAEGLAYDRCLVGVVANIDPNDSLPEFYIENAEKF 591 NRAVEAAVFENGSAAILAEGLAYDRCLVGVVANIDPNDSLPEFYIENAE+ Sbjct: 541 NRAVEAAVFENGSAAILAEGLAYDRCLVGVVANIDPNDSLPEFYIENAEQI 591 >gi|300311485|ref|YP_003775577.1| cyanophycin synthetase [Herbaspirillum seropedicae SmR1] Length = 857 Score = 403 bits (1035), Expect = e-113, Method: Compositional matrix adjust. Identities = 254/593 (42%), Positives = 351/593 (59%), Gaps = 17/593 (2%) Query: 4 IEFLRFLNLKGPNIWTYRSALEVWIDIGELEDFPSNTIPGFVDRLTTWLPTLIEHRCSYE 63 ++ R L+GPN+W+ +A+E + E E N +PGF RL P + E Sbjct: 1 MDVSRIRALRGPNLWSRHTAIEAIVSCPEDERVIDN-MPGFELRLRARFPQI----GFLE 55 Query: 64 ERGGFVRRLHEGTWPGHILEHVTLELQNLAGLPGGFGKARETNVRGVYKVVVRARHETVT 123 GG + H L L LQ+ AG P F + T G+Y+VVV E V Sbjct: 56 PDGG-----KQVVSLAHALAAAALGLQSQAGCPVTFSRTVSTVETGIYQVVVEYSEEEVG 110 Query: 124 RAALFAARDLVMAAMENQPYDLDTTLRKLRRMVDRLCLGPSTACIVDAADERRIPTIRLS 183 R A A +LV AA + P+DL TL ++R + + + LGPST IV+AA +R IP RL+ Sbjct: 111 RLAFDLALELVRAAQADAPFDLTATLTRIRELDEDVRLGPSTGSIVNAAIKRGIPFRRLT 170 Query: 184 EGNLVQLGHGCKSRRIWTAESDQTGAIAEGISRDKDLTKSLLETCGVPVPEGRLVDSPAD 243 +G++VQ G G + +RI AE+ T AIAE I++DKDLTK LL GVPVP GR+V++ D Sbjct: 171 QGSMVQFGWGSRQKRIQAAETSNTSAIAESIAQDKDLTKMLLHAAGVPVPNGRVVETVED 230 Query: 244 AWDAAQDIGLPVVVKPCDANHGRGVFIDLNTREEIETAYKVALEEGSGVLVERFVPGLEH 303 A AA++IG VV+KP D N G+GV ++++T E+I A+ A V+VER++PG + Sbjct: 231 ALKAAEEIGSAVVIKPLDGNQGKGVAVNISTPEQITRAFNNAALISDEVIVERYLPGHDF 290 Query: 304 RLLIVGGKLAAAARGEPIFIVGDGKSTVQDLLDELNRDPRRGLLEEHLLDPVLLDREPAA 363 RLL++G L AAAR +P ++GDG T++ L+D++N DP RG L + LD + Sbjct: 291 RLLVIGKTLVAAARRDPPQVIGDGVHTIRQLIDQVNADPLRGDGHATSLTKIRLDDIALS 350 Query: 364 VLELQRQNLTTESVPAAGRRILLLRNGNVS-----SDITDLVHPSVAAAASLAARIVGLD 418 VL QNL E++PA G R++L N N+S +D+TD VHP VAA A AA++VGLD Sbjct: 351 VLS--GQNLDPEAIPAQGVRVVLRNNANLSTGGTATDVTDDVHPDVAARAIAAAQMVGLD 408 Query: 419 IAGVDIVAEDISRPLQDQGGAIVEVNAGPGLLMHLKPSDGKPRPVGEAIIDNLFGPEENG 478 I GVD+V + L++QGG IVEVNA PGL MHL PS GK R VGEAI+ ++ ++G Sbjct: 409 ICGVDVVCNSVHMSLEEQGGGIVEVNAAPGLRMHLSPSYGKARDVGEAIVSTMYEDGDDG 468 Query: 479 RIPVVGVTGTHGKTTISRLIARIVHLSGKHVGLACGEGLYFDERLVERGNRATWEAAHRV 538 RIPVV V GT+GKTT RLI ++ +G VG+ +G+Y D + + G+ + +A V Sbjct: 469 RIPVVAVAGTNGKTTTVRLITHLLAKTGLRVGMTNTDGVYIDGQRTDTGDCSGPRSARNV 528 Query: 539 LLNRAVEAAVFENGSAAILAEGLAYDRCLVGVVANIDPNDSLPEFYIENAEKF 591 L + V+AAV E +L EGL +DRC V VV NI D L YI E Sbjct: 529 LFHPDVDAAVLETARGGVLREGLGFDRCAVAVVTNIGMGDHLGLSYISTVEDL 581 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.138 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,441,936 Number of extensions: 104567 Number of successful extensions: 319 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 316 Number of HSP's successfully gapped: 2 Length of query: 836 Length of database: 1,619,870 Length adjustment: 93 Effective length of query: 743 Effective length of database: 1,179,515 Effective search space: 876379645 Effective search space used: 876379645 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 135 (56.6 bits)