BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0269.p
         (850 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311491|ref|YP_003775583.1| PII uridylyltransferase [Herbas...  1675   0.0  

>gi|300311491|ref|YP_003775583.1| PII uridylyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 850

 Score = 1675 bits (4337), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 803/850 (94%), Positives = 828/850 (97%)

Query: 1   MPTLAITLKKQLKAARQQAIEVFQSNHKTEQLLAQLRRNVDEALTTAWEELGMSGNAALV 60
           MPTLAITLKKQLKAARQQAIEVFQSNHKTEQLLAQLRR VDEALT AWE LGMSGNAALV
Sbjct: 1   MPTLAITLKKQLKAARQQAIEVFQSNHKTEQLLAQLRRTVDEALTQAWEALGMSGNAALV 60

Query: 61  AVGGYGRGELFPHSDVDVLILLDQPPDAAKKEKLESLVQLFWDIGLEIGHSIRTIDECLD 120
           AVGGYGRGELFPHSDVDVLILLD+ PDA KKEKLESLVQLFWDIGLEIGHSIRTIDECLD
Sbjct: 61  AVGGYGRGELFPHSDVDVLILLDKAPDAGKKEKLESLVQLFWDIGLEIGHSIRTIDECLD 120

Query: 121 ESAADITVQTSLLEARLVTGNRALFKKLQERYHAALEPLAFFQAKTLEMRQRHIKYEDTP 180
           ESAADITVQTSLLEARLVTG+RALFK+LQERY AAL+PLAFFQAKTLEMRQRH+KYEDTP
Sbjct: 121 ESAADITVQTSLLEARLVTGSRALFKQLQERYQAALDPLAFFQAKTLEMRQRHVKYEDTP 180

Query: 181 YSLEPNCKESPGGLRDLQVILWVAKAAGLGNSWGELAEHGMLTSTEARQLRQKERAFKDI 240
           YSLEPNCKESPGGLRDLQVILWVAKAAGLG+SW ELAEHGMLTSTEARQLRQKERAFKDI
Sbjct: 181 YSLEPNCKESPGGLRDLQVILWVAKAAGLGHSWSELAEHGMLTSTEARQLRQKERAFKDI 240

Query: 241 RIRLHILTDRREDRLVFDIQTQIAETFGFKTTDTRRASEYLMQRYYWAAKAVTQLNTILL 300
           RIRLHILTDRREDRLVFDIQTQIAETFGFKTTDTRRASEYLMQRYYWAAKAVTQLNTILL
Sbjct: 241 RIRLHILTDRREDRLVFDIQTQIAETFGFKTTDTRRASEYLMQRYYWAAKAVTQLNTILL 300

Query: 301 QNIEAHLFPQQAVPRPLNERFNEVNGFVDIAHDKVFEETPSAMLEVFLVLAEHPELKDMS 360
           QNIEAHLFPQQAVPR +NERFNEVNGFVDIAHD VFEETPSAMLEVFLVL++H ELKDMS
Sbjct: 301 QNIEAHLFPQQAVPRQINERFNEVNGFVDIAHDHVFEETPSAMLEVFLVLSQHAELKDMS 360

Query: 361 ARTLRALWHARFKIDNAFRADPGNHRLFMQIIQSKRGIIHALRGMNSSSVLGRYLPNFRQ 420
           ART+RALWHARFKIDNAFR +P NHRLFMQI+QSKRGI HALR MN++SVLGRYLPNFRQ
Sbjct: 361 ARTMRALWHARFKIDNAFRNNPENHRLFMQILQSKRGITHALRRMNATSVLGRYLPNFRQ 420

Query: 421 IVGQMQHDLFHVYTVDQHILMVVRNVRRFTMSEHAHEYPFCSQLMANFGQPWVLYVAALF 480
           IVGQMQHDLFHVYTVDQHILMVVRNVRRFTMSEHAHEYPFCSQLMANF QPWVLYVAALF
Sbjct: 421 IVGQMQHDLFHVYTVDQHILMVVRNVRRFTMSEHAHEYPFCSQLMANFAQPWVLYVAALF 480

Query: 481 HDIAKGRGGDHSKLGMADARAFCEQHGISPDNTELIVFLVEQHLAMSHVAQKQDMSDPDV 540
           HDIAKGRGGDHSKLGMADARAFC QHGISP+NT+LIVFLVEQHLAMSHVAQKQDMSDPDV
Sbjct: 481 HDIAKGRGGDHSKLGMADARAFCVQHGISPENTDLIVFLVEQHLAMSHVAQKQDMSDPDV 540

Query: 541 ITAFAQLVKDERHLTALYLLTVADIRGTSPKVWNAWKGKLLEDLYRMTLRVLGGEAPSTD 600
           ITAFAQLVKDERHLTALYLLTVADIRGTSPKVWNAWKGKLLEDLYRMTLRVLGGE PS D
Sbjct: 541 ITAFAQLVKDERHLTALYLLTVADIRGTSPKVWNAWKGKLLEDLYRMTLRVLGGEEPSAD 600

Query: 601 RELKNTQQEAIKTLRLYGLPADAHEALWKQLDVAYFLRHDASDIAWQTRCFYDKVDTGVP 660
           RELKNTQQEAIKTLRLYGLPADAHE LWKQLDVAYFLRHDASDIAWQTRCF+DKVDT VP
Sbjct: 601 RELKNTQQEAIKTLRLYGLPADAHEQLWKQLDVAYFLRHDASDIAWQTRCFFDKVDTAVP 660

Query: 661 LVRCRLAPIGEGVQVAVYTPDRPDLFARICSYFDEKSFSIFDAKIHTTRNDYALDAFLIN 720
           LVRCRLAPIGEGVQVAVYTPDR DLFARICSYFDEKSFSIFDAKIHTTRN+YALDAFLIN
Sbjct: 661 LVRCRLAPIGEGVQVAVYTPDRQDLFARICSYFDEKSFSIFDAKIHTTRNNYALDAFLIN 720

Query: 721 APVFAKNYRDIINLIEHELGALLQSDAPLPAPSKARLSRLSRTFPVNPSVDLRPDERGQY 780
           APVFAKNYRDIINLIEHELGALLQS+ PLPAPSKARLSRLSRTFPVNP+VDLRPDERGQY
Sbjct: 721 APVFAKNYRDIINLIEHELGALLQSEEPLPAPSKARLSRLSRTFPVNPAVDLRPDERGQY 780

Query: 781 YLLSVSANDRAGLLYSISNVLAKYRINLHTAKVMTLGERVEDVFLIDGPGLSQPRNQIML 840
           YLLS+SANDRAGLLYSISNVLAKY+INLHTAKVMTLGERVEDVFLIDGPGLSQPRNQI+L
Sbjct: 781 YLLSISANDRAGLLYSISNVLAKYKINLHTAKVMTLGERVEDVFLIDGPGLSQPRNQILL 840

Query: 841 ETELLQTLRI 850
           ET+LL+TLRI
Sbjct: 841 ETDLLKTLRI 850


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,599,722
Number of extensions: 108791
Number of successful extensions: 289
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 289
Number of HSP's successfully gapped: 1
Length of query: 850
Length of database: 1,619,870
Length adjustment: 93
Effective length of query: 757
Effective length of database: 1,179,515
Effective search space: 892892855
Effective search space used: 892892855
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 135 (56.6 bits)