BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0262.p
         (365 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311498|ref|YP_003775590.1| phosphatidate cytidylyltransfer...   428   e-121
gi|300309422|ref|YP_003773514.1| phosphatidate cytidiltransferas...    58   1e-09

>gi|300311498|ref|YP_003775590.1| phosphatidate cytidylyltransferase
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 275

 Score =  428 bits (1101), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 228/253 (90%), Positives = 241/253 (95%)

Query: 1   MLKTRVITALILLAILLPILYFGYFPAFAMAVLVFFAAGSWECFRLFKSPRPTLWAAVWT 60
           MLKTRVITALILLAILLPILYFGYFPAFAMA LVFFAAG+WECFRLFKSPRPTLWAA+WT
Sbjct: 1   MLKTRVITALILLAILLPILYFGYFPAFAMAALVFFAAGAWECFRLFKSPRPTLWAALWT 60

Query: 61  LVFSVILFFSGLPSVRALYVLCVLLWALRFVPALGLGLPRIEAFGNRLLNGTYMLSILGC 120
           L F VILFF+G+PSVR LYVLCVLLWA+RFVPALGLGLP +E+F NRLLN TYMLSILGC
Sbjct: 61  LAFCVILFFTGMPSVRPLYVLCVLLWAVRFVPALGLGLPPVESFANRLLNATYMLSILGC 120

Query: 121 FVAIVDLFQHSPLYLLSVMAVVWVADIGAYFSGKGFGRHKLAPTISPGKSWEGAIGGWLA 180
           FVAIVDLFQ +PLYLLSVMAVVWVADIGAYFSGKGFGRHKLAPTISPGKSWEGA+GGWLA
Sbjct: 121 FVAIVDLFQRAPLYLLSVMAVVWVADIGAYFSGKGFGRHKLAPTISPGKSWEGAVGGWLA 180

Query: 181 VLVISAAVAMSMSGGETFQYHLFNRWGWGGFVGVLSLMVVASVVGDLFESQLKRRAGMKD 240
           VLVISAAVAMSM  GETFQYHL++RWGW GFVGVL++MV ASVVGDLFESQLKRRAGMKD
Sbjct: 181 VLVISAAVAMSMGAGETFQYHLYSRWGWLGFVGVLTVMVAASVVGDLFESQLKRRAGMKD 240

Query: 241 SSNLLPGHGGVLD 253
           SSNLLPGHGGVLD
Sbjct: 241 SSNLLPGHGGVLD 253


>gi|300309422|ref|YP_003773514.1| phosphatidate cytidiltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 313

 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 57/110 (51%), Gaps = 14/110 (12%)

Query: 145 ADIGAYFSGKGFGRHKLAPTISPGKSWEGAIGGWLAVLVISAAVAMSMSGGETFQYHLFN 204
           +D+  Y  GK FG+ KLAP ISP K+ EG +GG    ++ S AV     G   +    FN
Sbjct: 195 SDVFQYVWGKLFGKRKLAPQISPSKTLEGLVGG----VLTSTAV-----GAALYWITPFN 245

Query: 205 RWGWGGFVGVLSLMV-VASVVGDLFESQLKRRAGMKDSSNLLPGHGGVLD 253
            W       +++L + +    G    S +KR  G+KD   ++ GHGG+LD
Sbjct: 246 VWQ----AALVALTINILGFFGGFVLSAIKRDRGLKDWGAMIEGHGGMLD 291


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.330    0.142    0.476 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,083,142
Number of extensions: 46193
Number of successful extensions: 170
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 2
Length of query: 365
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 279
Effective length of database: 1,212,660
Effective search space: 338332140
Effective search space used: 338332140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 131 (55.1 bits)