BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0261.p
         (313 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311499|ref|YP_003775591.1| 1-deoxy-D-xylulose 5-phosphate ...   594   e-171

>gi|300311499|ref|YP_003775591.1| 1-deoxy-D-xylulose 5-phosphate
           reductoisomerase [Herbaspirillum seropedicae SmR1]
          Length = 390

 Score =  594 bits (1531), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 296/313 (94%), Positives = 299/313 (95%)

Query: 1   VAYGPQALCDIASADGCDMVMAAIVGAAGLASTLAAARAGKKILLANKEALVISGQLLMD 60
           VAYGPQALCDIASA+GCDMVMAAIVGAAGLASTLAAARAGKKILLANKEALVISGQLLMD
Sbjct: 78  VAYGPQALCDIASANGCDMVMAAIVGAAGLASTLAAARAGKKILLANKEALVISGQLLMD 137

Query: 61  AVQAHGASLLPIDSEHNAIFQCLPAGYTRSMTAHGVEKILLTASGGPFLHRDVNTLDQVT 120
           AV AHGASLLPIDSEHNAIFQCLP GYTRSM+AHGVEKILLTASGGPFL RDV TLD VT
Sbjct: 138 AVAAHGASLLPIDSEHNAIFQCLPPGYTRSMSAHGVEKILLTASGGPFLTRDVGTLDTVT 197

Query: 121 VEEAVAHPKWVMGRKISVDSATMMNKGLEVIEAHWLFGAPADKIEVVIHPQSVIHSMVSY 180
           VEEAVAHPKWVMGRKISVDSATMMNKGLEVIEAHWLFGAPADKIEVVIHPQSVIHSMVSY
Sbjct: 198 VEEAVAHPKWVMGRKISVDSATMMNKGLEVIEAHWLFGAPADKIEVVIHPQSVIHSMVSY 257

Query: 181 ADGSVLAQLGNPDMRTPIANALAYPERIASGVAALDLAQIAQLSFLPPDYQRFPCLKLAY 240
           ADGSVLAQLGNPDMRTPIANALAYPERIASGVA LDLAQIAQLSF  PD+QRFPCLKLAY
Sbjct: 258 ADGSVLAQLGNPDMRTPIANALAYPERIASGVAPLDLAQIAQLSFSEPDFQRFPCLKLAY 317

Query: 241 DALRAGGTLAAILNAANEVAVQAFLDGRIGFGKIAPLIQEVMSAIPNRQADDITALLEQD 300
           DALRAGGTLAAILNAANEVAVQAFL  RIGFGKIAPLI EVMSAIPNRQADDI ALLEQD
Sbjct: 318 DALRAGGTLAAILNAANEVAVQAFLGRRIGFGKIAPLIDEVMSAIPNRQADDIDALLEQD 377

Query: 301 RQARDHAEALISR 313
           RQAR HAE LISR
Sbjct: 378 RQARSHAEHLISR 390


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.133    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 927,639
Number of extensions: 36355
Number of successful extensions: 134
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 228
Effective length of database: 1,217,395
Effective search space: 277566060
Effective search space used: 277566060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)