BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0258.p
         (793 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311501|ref|YP_003775593.1| outer membrane /protective OMA8...  1547   0.0  

>gi|300311501|ref|YP_003775593.1| outer membrane /protective OMA87
           antigen protein [Herbaspirillum seropedicae SmR1]
          Length = 791

 Score = 1547 bits (4006), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 753/793 (94%), Positives = 774/793 (97%), Gaps = 2/793 (0%)

Query: 1   MKLHPAQHPIPTLSRRLIAAAAFALCSSQAMAITPFVVKDIRVEGIQRTEAGTVFSYLPV 60
           MKLHPAQHPIPT SRRLIAAAAFALCSSQAMA+TPFVVKDIRVEGIQRTEAGTVFSYLPV
Sbjct: 1   MKLHPAQHPIPTFSRRLIAAAAFALCSSQAMAVTPFVVKDIRVEGIQRTEAGTVFSYLPV 60

Query: 61  RVGDTFNDEKATAAIKALYATGFFRDVRIEAEGDVLVVQVVERPAIASVDFSGIKEFDKE 120
           RVGDTF DEK TAAIKALYATGFFRDVRIE+EGDVLVVQVVERPAIASVDFSGIKEFDKE
Sbjct: 61  RVGDTFTDEKGTAAIKALYATGFFRDVRIESEGDVLVVQVVERPAIASVDFSGIKEFDKE 120

Query: 121 QLTKALKEIGVAESRIFDRSQVDRAEQELKRQYLSRGLYGAKVSTTVTPVERNRVAITFA 180
           QLTKALKEIGVAESRIFDRSQVDRAEQELKRQYLSRGLYGAKVSTTVTPVERNRVAITF+
Sbjct: 121 QLTKALKEIGVAESRIFDRSQVDRAEQELKRQYLSRGLYGAKVSTTVTPVERNRVAITFS 180

Query: 181 VDEGEVSRIKQINFVGNKVFSDSTLRDQIKLTTPGWFTWYTKADQYSKEKLQGDIETLRS 240
           VDEG+VSRIKQINFVGNKVFSDSTLRDQIKLTTPGWFTWYTKADQYSKEKLQGDIETLRS
Sbjct: 181 VDEGDVSRIKQINFVGNKVFSDSTLRDQIKLTTPGWFTWYTKADQYSKEKLQGDIETLRS 240

Query: 241 YYLDRGYLEMQVESTQVSITPDKKDIYITVNIKEGEKYTVSDIKLEGEMFGMEPELAKLV 300
           YYLDRGYLEMQVESTQVSITPDKKDIYITVNIKEGEKYTVS +KLEGEMFGMEPELAKLV
Sbjct: 241 YYLDRGYLEMQVESTQVSITPDKKDIYITVNIKEGEKYTVSGVKLEGEMFGMEPELAKLV 300

Query: 301 QLKKGDVYSGAKLTDSTKKIGERLGNFGYAFANVNANPNVDREKKEVAFTIMVDPGKRVY 360
           QLK GDVYSGAKLTDSTKKIGERLGNFGYAFANVNANPNVDREKKEVAFTIM+DPGKRVY
Sbjct: 301 QLKAGDVYSGAKLTDSTKKIGERLGNFGYAFANVNANPNVDREKKEVAFTIMIDPGKRVY 360

Query: 361 VRHVNIAGNTKTRDEVIRREFRQFEDSWYDGEKIKLSRDRVDRLGYFKEVTVDTPEVPGT 420
           VRH+NIAGNTKTRDEVIRREFRQFEDSWYDGEKIKLSRDRVDRLGYFKEVT+DTPEVPGT
Sbjct: 361 VRHINIAGNTKTRDEVIRREFRQFEDSWYDGEKIKLSRDRVDRLGYFKEVTLDTPEVPGT 420

Query: 421 SDQVDVNMKVEEKPTGNIMVGAGFSQSDKLSLTGSISQENAFGSGNTVGIDINTSSRYRT 480
           SDQVDVNMKVEEKPTGNIMVGAGFSQSDKLSLTGSISQENAFGSGNTVGIDINTSSRYRT
Sbjct: 421 SDQVDVNMKVEEKPTGNIMVGAGFSQSDKLSLTGSISQENAFGSGNTVGIDINTSSRYRT 480

Query: 481 ISLSTTNPYFTDDGISRTYEIYLRTIRPSVYTTGDYRVKTLGGSIKFGVPFSELDRVFFG 540
           +S+STTNPYFTDDGISRTYE+YLRT+RPSVY TGDYRVKTLGGSIKFGVPFSELDRVFFG
Sbjct: 481 VSVSTTNPYFTDDGISRTYEVYLRTVRPSVYATGDYRVKTLGGSIKFGVPFSELDRVFFG 540

Query: 541 IGLENTNVSTDNTSPTLYRQYVRDFGGVGGSGCNVTDVSSTATCGIGSARTTSIPLTVAW 600
           +GLENT+VSTD TSPTLYRQYVRDFGG G +GC+VT  SS   CGIGSARTTSIPLTVAW
Sbjct: 541 VGLENTDVSTDTTSPTLYRQYVRDFGGAGVAGCDVT--SSGNGCGIGSARTTSIPLTVAW 598

Query: 601 QRDGRDSALVPTIGRYQRANFEVSYVGTLKYYRASYQQQYFQPFFSKAVTLALNGEVDYG 660
           QRDGRDSALVPT GRYQRAN EVSY+GTLKYYRASYQ QYFQPFFSKAVTLALNGEVDYG
Sbjct: 599 QRDGRDSALVPTTGRYQRANLEVSYLGTLKYYRASYQHQYFQPFFSKAVTLALNGEVDYG 658

Query: 661 RGLGSKPYPVFKNYYAGGIGTVRGYEANSLGSLKDQYGDSMGGASRLYGSAELQFPFPGS 720
           RG+GSKPYPVFKNYYAGGIGTVRGYEA+SLGSLKDQYGDSMGGASRLYG+ ELQFPFPGS
Sbjct: 659 RGIGSKPYPVFKNYYAGGIGTVRGYEASSLGSLKDQYGDSMGGASRLYGNVELQFPFPGS 718

Query: 721 GQDRTLRWFTFFDGGNVFADGENIKFNDLRYSAGVGISWVSPIGPLKLSFGKPLNLKAGD 780
           GQDRTLRWFTFFDGGNVFADG+NIKFNDLRYSAGVGISWVSPIGPLKLSFGKPLNLK GD
Sbjct: 719 GQDRTLRWFTFFDGGNVFADGQNIKFNDLRYSAGVGISWVSPIGPLKLSFGKPLNLKTGD 778

Query: 781 KSQTFQFQLGTGF 793
           KSQTFQFQLGTGF
Sbjct: 779 KSQTFQFQLGTGF 791


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.135    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,368,526
Number of extensions: 99938
Number of successful extensions: 288
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 284
Number of HSP's successfully gapped: 1
Length of query: 793
Length of database: 1,619,870
Length adjustment: 93
Effective length of query: 700
Effective length of database: 1,179,515
Effective search space: 825660500
Effective search space used: 825660500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 134 (56.2 bits)