BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0243.p
         (411 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311513|ref|YP_003775605.1| beta-lactamase class C protein ...   546   e-156

>gi|300311513|ref|YP_003775605.1| beta-lactamase class C protein
           [Herbaspirillum seropedicae SmR1]
          Length = 451

 Score =  546 bits (1407), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 275/400 (68%), Positives = 320/400 (80%), Gaps = 2/400 (0%)

Query: 5   LMLASVSVLAQES--PDMTAVAERVDQQMTQLLGQYPVPGASIAIAYQGKLVYQRGYGMA 62
           ++L      AQE+    +  +  RVD QM +LL  YP+PGASIAIAYQG+LVYQRGYGMA
Sbjct: 27  MLLPGCPTRAQETAPSPLQGLEARVDAQMGRLLAAYPIPGASIAIAYQGRLVYQRGYGMA 86

Query: 63  VTESNTPVTPLTRFRIGSVSKPVTAVAVLKLFEKELPQVLDRPVFGPEGLLPDAAYPDFA 122
           VTE+ TPVTP TRFRIGS+SK VTA+A+LKLFE ELP+ L+R VFGP+GLLPD AYPDFA
Sbjct: 87  VTETQTPVTPQTRFRIGSISKSVTAMAMLKLFEGELPEALERRVFGPDGLLPDTAYPDFA 146

Query: 123 QPLDQRVLKITLRELLQHTSGWGGSDYDPQYDLVNIAKARQVAAPASARDVIAYVLKQRL 182
           QPLD+R LKITLR+LLQHT+GWG SDY+P  DL +IA+  +V +PASA+DVIAYVLKQRL
Sbjct: 147 QPLDRRALKITLRDLLQHTAGWGDSDYEPLDDLRHIAEVMKVKSPASAKDVIAYVLKQRL 206

Query: 183 LDAAPGTEFFYSNFAYNVLGRLVEQKSGMSYEEAVQALVFKPAAVEDAAIAGDRRIERAA 242
           LDAAPGTEFFY NFAY VLGR++EQ+SG+ Y +AVQALV+ PA V DAAIA D R  RAA
Sbjct: 207 LDAAPGTEFFYDNFAYVVLGRIIEQRSGLPYAQAVQALVWHPAGVSDAAIAADGRAGRAA 266

Query: 243 NETVYYDDPRWPAVADRDGSGATGPESYSALHFKAMDATAGWIATAADLVHFADATQGRG 302
            E VYYDD RWP V   +G GA  P+SY   HF +MDATAGWIA+AADLV F DA QGR 
Sbjct: 267 GEAVYYDDARWPTVPVGEGEGAAAPQSYGVHHFSSMDATAGWIASAADLVQFVDAAQGRN 326

Query: 303 VAALLQPQTLALMKQRNPAQAENNYGLGWVVTRSNGVEILSHSGALTTGTYAYLQSRADG 362
              LLQPQT+ALMKQR+P   +N YGLGWV+TR+ GV+I+SHSGAL  G+YAYLQSRADG
Sbjct: 327 RPGLLQPQTVALMKQRHPRMPDNPYGLGWVLTRTGGVDIISHSGALPAGSYAYLQSRADG 386

Query: 363 WTWAVLMNRLPIPYPPEQGVSELQAFQVAVQRGLMNAIVN 402
           W+WAVL NR+P+ YPPEQ V  LQAFQ AVQRGLM AIV 
Sbjct: 387 WSWAVLFNRMPVAYPPEQDVEGLQAFQAAVQRGLMAAIVQ 426


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.131    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,352,029
Number of extensions: 59698
Number of successful extensions: 161
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 323
Effective length of database: 1,203,190
Effective search space: 388630370
Effective search space used: 388630370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)