BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0242.p (474 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311514|ref|YP_003775606.1| two component sensor histidine ... 815 0.0 gi|300313895|ref|YP_003777987.1| two-component system sensor his... 117 3e-27 gi|300310848|ref|YP_003774940.1| two component sensor histidine ... 112 4e-26 gi|300311468|ref|YP_003775560.1| oxidative stress resistance two... 104 1e-23 gi|300309980|ref|YP_003774072.1| two component transmembrane sen... 97 3e-21 >gi|300311514|ref|YP_003775606.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 473 Score = 815 bits (2106), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/473 (87%), Positives = 439/473 (92%), Gaps = 1/473 (0%) Query: 1 VGRLFWKFFFFIAIAQITATFGVGVLFWIENLERSNRNSEIDLSPPASFMIRAAAATLQF 60 +GRLFWKFFFFIAIAQITATFGVGVLFW+ENLERSNRNSEIDLSPPASFMIR+AAATLQF Sbjct: 1 MGRLFWKFFFFIAIAQITATFGVGVLFWVENLERSNRNSEIDLSPPASFMIRSAAATLQF 60 Query: 61 GGPEALRSLINEGRPHRLQLYAVDEDNQDLMGREVSPHLVEQARRVLATERDRRVVELVK 120 GG EALRSLINEGRPHRLQLYA+DEDN+DLMGREVSP LVEQA+ +LATER+RRVVE VK Sbjct: 61 GGTEALRSLINEGRPHRLQLYALDEDNKDLMGREVSPKLVEQAKHILATERERRVVERVK 120 Query: 121 AANGHSYLMFIPTPNDEFGPPPGGMPGREPRYMKDRGGPKPLFFPTMPIAVALVASLVFA 180 A NGHSYLMFIP PNDEFGP REP + +RG PK +FFPTMPI VAL+ASLVFA Sbjct: 121 APNGHSYLMFIPAPNDEFGPGGPPGGAREPHRIGERG-PKSMFFPTMPIVVALLASLVFA 179 Query: 181 LLLAWYFSHPIRHLKNAFNQAANGNLDQALEPVMSARNDELADLGRDFDAMTAKLRTLME 240 LLLAWYFSHPI HLKNAFNQAANGNLD LEPVMSARNDELADLGRDFD MTAKLRTLME Sbjct: 180 LLLAWYFSHPIGHLKNAFNQAANGNLDLELEPVMSARNDELADLGRDFDVMTAKLRTLME 239 Query: 241 SQRRLLHDVSHELRSPIARLQMAIGLARVQDKDKLELTLERIERESVRMDKLVGELLTLS 300 SQRRLLHDVSHELRSPIARLQ+AIGLARVQDKDKL+LTLERIERESVRMDKLVGELLTLS Sbjct: 240 SQRRLLHDVSHELRSPIARLQVAIGLARVQDKDKLDLTLERIERESVRMDKLVGELLTLS 299 Query: 301 RLEANVPGSMEEAIAIQAMLADMTNDASFEAEALGKRVESRIDCRVQVKGNPELLYRAIE 360 RLEANVPGSMEE IAI+AML DM NDASFEAEA+GK V+ ++DCRVQVKGNPELLYRAIE Sbjct: 300 RLEANVPGSMEEPIAIEAMLGDMINDASFEAEAIGKHVDDQLDCRVQVKGNPELLYRAIE 359 Query: 361 NVLRNAIKHTAPETAVQFVAEIDEVNKLLHLSILDRGPGVPEEEMDSIFELFFRSSRTKS 420 NVLRNAIKHTAP T VQ ++DE+NKLLHLSILDRGPGVPEEEM+SIFELFFRSSRTKS Sbjct: 360 NVLRNAIKHTAPGTTVQIHTQLDEINKLLHLSILDRGPGVPEEEMNSIFELFFRSSRTKS 419 Query: 421 NSAGHGLGLSIARRIVEAHQGFIRAANRSDGGLRVDITLPFMADEPARGDTAE 473 NS+GHGLGLSIARRIVEAHQGFI+AANRS+GGLRVDITLPFMADEPARGDT E Sbjct: 420 NSSGHGLGLSIARRIVEAHQGFIQAANRSNGGLRVDITLPFMADEPARGDTVE 472 >gi|300313895|ref|YP_003777987.1| two-component system sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 475 Score = 117 bits (292), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 97/300 (32%), Positives = 152/300 (50%), Gaps = 17/300 (5%) Query: 169 IAVALVASLVFALL---LAWYFSHPIRHLKNAFNQAANGNLDQALEPVMSARNDELADLG 225 I +A+VA ++ A L ++ + P+ + A ++ A+G D A+ V DE+ L Sbjct: 175 IIIAVVAVMLAAFLVVRISGVLTRPLTRVARATHRLASG--DYAIR-VEVESGDEVGMLA 231 Query: 226 RDFDAMTAKLRTLMESQRRLLHDVSHELRSPIARLQMAIGLARVQDKDKLE---LTLERI 282 +DF+ + L + +R + DVSHELR+P+A L G + L+ TL + Sbjct: 232 QDFNQLAMTLERNEKLRREFMADVSHELRTPLAILN---GQLEALEDGVLQPDAQTLRSL 288 Query: 283 ERESVRMDKLVGELLTLSRLEANVPGSMEEAIAIQAMLADMTNDASFEAEALGKRVESRI 342 + E ++KLVG+L LS +A I + +L D S G R+ + Sbjct: 289 KSEVEHLNKLVGDLYDLSLADAGALTYRRADIDLAPLLRDSAALYSDRFSQRGMRLSCEL 348 Query: 343 DCRVQVKGNPELLYRAIENVLRNAIKHTAPETAVQFVAEIDEVNKLLHLSILDRGPGVPE 402 + V G+ L + + N+ N++++T +Q A + + + HL D PGVP Sbjct: 349 PASMPVHGDAARLQQLLSNLFENSLRYTDAGGRLQVHAHLQQQH--WHLVFDDSEPGVPP 406 Query: 403 EEMDSIFELFFR--SSRTKSNSAGHGLGLSIARRIVEAHQGFIRAANRSDGGLRVDITLP 460 E M +FE FFR +SR ++ S G GLGL+I RRIV+AHQG I A+ GGLRV + LP Sbjct: 407 EVMARLFERFFRVEASRNRA-SGGAGLGLAICRRIVDAHQGTIGASASPLGGLRVVVVLP 465 >gi|300310848|ref|YP_003774940.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 465 Score = 112 bits (281), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 99/321 (30%), Positives = 162/321 (50%), Gaps = 26/321 (8%) Query: 146 PGREPRYMKDRGGP--KPLFFPTMPIAVALVASLVFALLLAWYFSHPIRHLKNAFNQAAN 203 PG EP ++ R GP F I + LV + A L+A + PIR L A ++ + Sbjct: 161 PG-EPPALRARAGPGGPASLFGLQYILLFLVLIAMLAWLVARMATRPIRQLAQAASRLGS 219 Query: 204 GNLDQALEPVMSARNDELADLGRDFDAMTAKLRTLMESQRRLLHDVSHELRSPIARLQMA 263 ++D A P+ E+ F+AM A++R ++ + +L ++H+L++P+ R M Sbjct: 220 -DIDHA--PLAETGPTEIRQAAHAFNAMQARIRRQIQHRTHMLAAITHDLQTPLTR--MR 274 Query: 264 IGLARVQDKDKLELTLERIERESVRMDKLVGELLTLSRLEANVPGSMEEAIAIQAMLAD- 322 + L +V D L + I+ V M +V E L L+R SM+ + IQA+ D Sbjct: 275 LRLEKVSDPG---LQQKLIDDLGV-MHGMVREGLDLAR-------SMDSSEKIQALDIDS 323 Query: 323 MTNDASFEAEALGKRVESRIDCRVQVKGNPELLYRAIENVLRNAIKHTAPETAVQFVAEI 382 + + +A G+ V + R V P L R + N++ NA K+ V E Sbjct: 324 LLDSVCADAADAGQDVALQGSTRAFVMAQPGALRRCLTNLIDNACKY-GKSARVSIALEQ 382 Query: 383 DEVNKLLHLSILDRGPGVPEEEMDSIFELFFRSSRTKS-NSAGHGLGLSIARRIVEAHQG 441 ++ + I D+GPG+PE E++++FE F+R ++S ++ G GLGL+IA I E H G Sbjct: 383 QKIA----IRIRDQGPGIPESELEAVFEPFYRLEASRSRDTGGTGLGLTIALNIAENHHG 438 Query: 442 FIRAANRSDGGLRVDITLPFM 462 +R N ++GGL V + LP M Sbjct: 439 QLRLRNLAEGGLEVLLELPPM 459 >gi|300311468|ref|YP_003775560.1| oxidative stress resistance two component transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 455 Score = 104 bits (260), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 84/298 (28%), Positives = 147/298 (49%), Gaps = 22/298 (7%) Query: 170 AVALVASLVFALLLAWYFSHPIRHLKNAFNQAANGNLDQALEPVMSARNDELADLGRDFD 229 ++AL SL+ A+ ++ + P+ L A A G + EP+ + E+ + R F+ Sbjct: 167 SIALFLSLIGAVFISTLINQPLARLTAAARAIAKG---RQPEPLPESGPTEIEEANRSFN 223 Query: 230 AMTAKLRTLMESQRRLLHDVSHELRSPIARLQMAIGLARVQDKDKLELTLERIERESVRM 289 M A L + + +L +SH+LR+P+AR+Q+ + +A + D+ + + + + +M Sbjct: 224 QMVADLNRIESDRALILAGISHDLRTPLARMQLEVEMANLSDEAR-----DGMHSDLAQM 278 Query: 290 DKLVGELLTLSRLEANVPGSMEEAIAIQAMLADMTNDASFEAEALGKRVESRIDCRVQVK 349 D ++G+ L ++ S E I + +L D+ +AS ++ RV ++I QV Sbjct: 279 DSIIGQFLDYAK---PFDTSSLETIDLADVLQDVAGNASRLSDI---RVHTQITPDTQVA 332 Query: 350 GNPELLYRAIENVLRNAIKHTAPETAVQFVAEIDEVNKL----LHLSILDRGPGVPEEEM 405 GN L R N++ NA ++ E AEID +++ + + + D GPGVP E Sbjct: 333 GNGTELARVFSNLVENARRYGKTEGTD--CAEIDIRSRIEGHQVVVEVADHGPGVPVNEC 390 Query: 406 DSIFELFFRSSRTKSNSAGHGLGLSIARRIVEAHQG--FIRAANRSDGGLRVDITLPF 461 + + F R + + G GLGL+I RIV H G ++ + GL V ITLP Sbjct: 391 ERLLRPFTRLDTARGQANGSGLGLAIVNRIVLKHNGKLLLKGHEETRSGLLVQITLPL 448 >gi|300309980|ref|YP_003774072.1| two component transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 390 Score = 97.1 bits (240), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 80/276 (28%), Positives = 140/276 (50%), Gaps = 16/276 (5%) Query: 177 LVFALLLAWY-FSHPIRHLKNAFNQAANGNLDQALEPVMSAR-NDELADLGRDFDAMTAK 234 L AL L W+ S + L Q L P+ S + +E++ L R + M A+ Sbjct: 83 LPVALALVWFALSRGLSPLSE-LQQRIRARRPDDLSPIDSGQVPEEISPLVRSLNDMLAR 141 Query: 235 LRTLMESQRRLLHDVSHELRSPIARLQMAIGLARVQDKDKLEL--TLERIERESVRMDKL 292 L + Q+R + D +H++++P+A ++M LA QD D++++ +LE++ + S +L Sbjct: 142 LSQTIAIQKRFIADAAHQMKTPLAGMRMQSELALRQD-DQVDVRRSLEQLAKSSETATRL 200 Query: 293 VGELLTLSRLE--ANVPGSMEEAIAIQAMLADMTNDASFEAEALGKRVE---SRIDCRVQ 347 V +LL+L+R E + G M + + + + D + + +R++ + D + Sbjct: 201 VNQLLSLARAENQQSQSGGMI-PVELNELARSVVQD--WVPMSFTQRIDLGFEQPDHPIL 257 Query: 348 VKGNPELLYRAIENVLRNAIKHTAPETA--VQFVAEIDEVNKLLHLSILDRGPGVPEEEM 405 + GNP +L + N+L NA+ +T + V A DE L L + D GPG+P E Sbjct: 258 ITGNPVMLRELLSNLLDNALHYTPHDGNGRVTVRARTDEGGGLAILEVEDNGPGIPVAER 317 Query: 406 DSIFELFFRSSRTKSNSAGHGLGLSIARRIVEAHQG 441 ++FE F+R T S +G GLGL+I R I + H+ Sbjct: 318 ANVFERFYRILGTPSTGSGLGLGLAIVREIAQQHEA 353 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.137 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,313,370 Number of extensions: 50972 Number of successful extensions: 325 Number of sequences better than 1.0e-08: 35 Number of HSP's gapped: 277 Number of HSP's successfully gapped: 35 Length of query: 474 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 385 Effective length of database: 1,198,455 Effective search space: 461405175 Effective search space used: 461405175 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)