BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0239.p (526 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311516|ref|YP_003775608.1| TPR repeat containing protein [... 581 e-167 gi|300312874|ref|YP_003776966.1| TPR repeat-containing protein [... 202 5e-53 gi|300311388|ref|YP_003775480.1| TPR repeat containing protein [... 190 3e-49 gi|300312352|ref|YP_003776444.1| TPR repeat containing protein [... 155 8e-39 >gi|300311516|ref|YP_003775608.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 528 Score = 581 bits (1498), Expect = e-167, Method: Compositional matrix adjust. Identities = 343/524 (65%), Positives = 394/524 (75%), Gaps = 2/524 (0%) Query: 1 MNAPDPATLAGIMGLMCEAIALRGAGQPAAALAALDQALRLDAGFLPVLMQRASLLQENG 60 MN+PDPATLA +MGLMC+AIALRGA Q AALAALDQAL LD FLP+ MQRA LLQE G Sbjct: 1 MNSPDPATLARLMGLMCDAIALRGAQQAEAALAALDQALALDPSFLPLYMQRADLLQEMG 60 Query: 61 DLPAAAAAYQACLDLLPDYDEARVAHRAVLLQWADALQARLLQEGARPVDQRVLLARLYH 120 LP A AA ACLDL PDYDEAR HR++L +WA + + EGA + LAR Sbjct: 61 ALPEAIAACAACLDLAPDYDEARALHRSLLQRWATQCELQTADEGASGSAALIDLARARL 120 Query: 121 QLDQPHAALSAIEPALPL--PALEDQALHADILLRLNRHEEALRCYPDDAAEDEARALIA 178 QLDQP AL+A+E AL L ALHADILLRLNRHEEAL CYP A ED+ARAL A Sbjct: 121 QLDQPLPALAAVERALASGQAGLALHALHADILLRLNRHEEALECYPPAADEDQARALHA 180 Query: 179 FNRADILRRMGRIEAAQAGYEEALRWHADFPQAQVGRGHMLLTRGDFAEGWREHEARFRI 238 FN ADILRRMGRIE AQA +E+ALRWH DFP+A+VGR HMLL++ +AEGWR HEARF I Sbjct: 181 FNMADILRRMGRIEQAQAAFEQALRWHPDFPEAEVGRAHMLLSQQHYAEGWRAHEARFGI 240 Query: 239 PELARRAIATPSPCWQHGESLSGKHILLWSEQGQGDCLQFARYLPLVAAQAAQVTLCAPA 298 ELARR I +P P W+ GE + GK +LLW+EQGQGD LQFARY+PLVA QAA+V+LCAPA Sbjct: 241 AELARRGIDSPRPRWRAGEPVRGKRVLLWAEQGQGDTLQFARYIPLVAQQAAEVSLCAPA 300 Query: 299 GLLAVLAPSFAQVRCVAHVSEAGPHDCHASLLSLPYLLDLPHPSQAPSAPYLKVDPIRLQ 358 LLAVLAP QVRC+A+ EA HD HASLLSLP LL LP P Q P +PYL P R+Q Sbjct: 301 SLLAVLAPCLPQVRCMANPGEAPDHDLHASLLSLPLLLGLPDPRQGPPSPYLAAQPQRVQ 360 Query: 359 QWQQRLAETAAASPRRPRIGLAWAGRQYATPHPSRDVPLAEWLPLFELPVEVVSLQVEIP 418 QWQ L+ A PRRPR+G+AWAGRQYAT H SRD+PL PL+ LP + VSLQVE+P Sbjct: 361 QWQAYLSALWPAMPRRPRLGIAWAGRQYATVHHSRDIPLDALAPLWTLPADFVSLQVEVP 420 Query: 419 LADQDVHQELSGRLRTFPLADWADSAALACALDLVISVDTAVVHLAGALGLPCFLPQRLE 478 DQ H L+ RL T L DWAD+AAL CALDLVISVDTAVVHLAGALG+PC LP R + Sbjct: 421 AGDQAAHATLAQRLHTPTLVDWADTAALLCALDLVISVDTAVVHLAGALGVPCLLPLRYD 480 Query: 479 GEWRWGVQGEQTAWYPSVRLFRQQQRGQWGSVVEEIVAACRERF 522 GEWRWGV+G QT WYPS++L RQ++RGQWG VVEE++A C +R Sbjct: 481 GEWRWGVKGSQTPWYPSLQLLRQRERGQWGPVVEEMLAVCTQRL 524 >gi|300312874|ref|YP_003776966.1| TPR repeat-containing protein [Herbaspirillum seropedicae SmR1] Length = 603 Score = 202 bits (514), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 173/533 (32%), Positives = 237/533 (44%), Gaps = 62/533 (11%) Query: 12 IMGLMCEAIALRGAGQPAAALAALDQALRLDAGFLPVLMQRASLLQENGDLPAAAAAYQA 71 + L+ ALR G+ ALA L++A L QR ++L ++ A +Y+ Sbjct: 110 VEALLARGAALRRLGRNREALADLERATALAPDNADAWFQRGNVLHDSYAYGDARESYER 169 Query: 72 CLDLLPDYDEARVAHRAVLLQWADALQARLLQEGARPVDQRVLLARLYHQLDQPHAALSA 131 + L PD+ EA W + ++G +QLDQ AL A Sbjct: 170 AVALRPDFIEA----------WFNL--GNTCKDG--------------NQLDQ---ALRA 200 Query: 132 IEPALPL--PALEDQALHADILLRLNRHEEALRCYPDDAAEDEARALIAFNRADILRRMG 189 + AL + E + +L ++ R EAL+ Y A DE + FNR L ++ Sbjct: 201 YDRALEVQPDFFEAISNRGYVLFKMQRPAEALQAYDRALALDERAPDLWFNRGSTLEQLY 260 Query: 190 RIEAAQAGYEEALRWHADFPQAQVGRGHMLLTRGDFAEGWREHEARFRIPELARRAIATP 249 R E A Y A D A M L +GDF GW+ E R+ ++ + Sbjct: 261 RFEEASESYRRAKALKPDAGSATWNEALMQLRQGDFVNGWKGFETRWATEQMRGQQRQFM 320 Query: 250 SPCWQHGESLSGKHILLWSEQGQGDCLQFARYLPLVAAQAAQVTLCAPAGLLAVLA--PS 307 P W + L GK ILL +EQG GD LQF RY PL+AA+ A+V L L LA P Sbjct: 321 QPLWLGEQPLEGKTILLHAEQGFGDTLQFVRYAPLLAARGARVILEVQPALTRQLAGLPG 380 Query: 308 FAQVRCVAHVSEAGPHDCHASLLSLPYLLDLPHPSQAPSAPYLKVDPIRLQQWQQRLAET 367 QV H P D H L+SLP + P APYL + W QRL Sbjct: 381 VTQVIGTDHFMRP-PFDFHCPLMSLPLACKTFSEADIPRAPYLLPEASSWAAWHQRLPRN 439 Query: 368 AAASPRRPRIGLAWAGRQYATPHPS-------RDVPLAEWLPLFELPVEVVSLQVEIPLA 420 R R+GL WAG A HP R +P A PL EL E +L+ Sbjct: 440 -----RALRVGLVWAGSS-AQTHPDAVRIDGERSLPFATLAPLVELAREHAALE----FY 489 Query: 421 DQDVHQELSGRLRTFPLA-----------DWADSAALACALDLVISVDTAVVHLAGALGL 469 V Q+ +L PLA D+A++ AL LDL+I+VDT+V HLAGALG Sbjct: 490 SLQVGQDAVAQLHAHPLASLVRDCSPELHDFAETGALLANLDLLITVDTSVCHLAGALGR 549 Query: 470 PCFLPQRLEGEWRWGVQGEQTAWYPSVRLFRQQQRGQWGSVVEEIVAACRERF 522 P +L R G WRW V+ E + WY + +F Q+ GQW V+ + AA +++ Sbjct: 550 PVWLLNRHNGCWRWQVEREDSPWYGGMTIFGQRTAGQWDEVIARVRAALQQQL 602 >gi|300311388|ref|YP_003775480.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 658 Score = 190 bits (482), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 128/372 (34%), Positives = 180/372 (48%), Gaps = 16/372 (4%) Query: 155 NRHEEALRCYPDDAAEDEARALIAFNRADILRRMGRIEAAQAGYEEALRWHADFPQAQVG 214 +R ++A+R + D AL N I G +E A + +AL ++P A+ Sbjct: 277 DRFDDAMRMFNKALEVDSKHALTYNNIGAIQHDHGDLEDAIGNFRKALELRPNYPTARHN 336 Query: 215 RGHMLLTRGDFAEGWREHEARFRIPELAR-----RAIATPSPCWQHGESLSGKHILLWSE 269 LL +G EGW HE+R E + + P W SL+GK+ILL E Sbjct: 337 IALSLLLQGHLKEGWECHESRLVTRERSHVYRLIHKLFDLIPKWDGKSSLAGKYILLMHE 396 Query: 270 QGQGDCLQFARYLPLVAAQAAQVTLCAPAGLLAVLAPSFAQVRCVAHVSEAGPHDCHASL 329 QG GD +QF RY+ +V Q A+V L L + +V V P DC L Sbjct: 397 QGFGDSIQFLRYVRMVLDQGARVALHVKNPLYRLFQSYSPEVTLVRESDPLPPCDCAYVL 456 Query: 330 LSLPYLLDLPHPSQAPSAP--YLKVDPIRLQQWQQRLAETAAASPRRPRIGLAWAGRQYA 387 +SLPY + PS P YL DPI W +++ + + SP + R+G+ W G Sbjct: 457 MSLPYAMGTDTVDDIPSVPGGYLSADPILKSSWGEKIRQLSQ-SPEKLRVGVVWGGNPEH 515 Query: 388 TPHPSRDVPLAEWLPLFELP-VEVVSLQVEIPLADQDVHQELSGRLRTFPLAD----WAD 442 R + + ++ LF+LP +E SLQ PL D + L L F L D +AD Sbjct: 516 GNDRHRSIAMDKFATLFQLPNIEFYSLQKGKPL---DAFKALPPGLPIFNLGDDCQDFAD 572 Query: 443 SAALACALDLVISVDTAVVHLAGALGLPCFLPQRLEGEWRWGVQGEQTAWYPSVRLFRQQ 502 +AA LDLV+SVDT+VVHLAGALG P ++ +WRW E + WYP +RLFRQ Sbjct: 573 TAAAIANLDLVVSVDTSVVHLAGALGHPTWVLLPHVPDWRWLQDREDSPWYPGMRLFRQP 632 Query: 503 QRGQWGSVVEEI 514 W SV+ ++ Sbjct: 633 ALSDWESVLTKV 644 >gi|300312352|ref|YP_003776444.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 570 Score = 155 bits (392), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 136/373 (36%), Positives = 186/373 (49%), Gaps = 16/373 (4%) Query: 155 NRHEEALRCYPDDAAEDEARALIA--FNRADILRRMGRIEAAQAGYEEALRWHADFPQAQ 212 + EEALR Y D A A L+ +R L R+ + E A Y ALR A Sbjct: 195 GQFEEALRYY--DQALILAPELVDAHVSRGTTLARLRQHEEAIDSYRRALRIDDKDADAH 252 Query: 213 VGRGHMLLTRGDFAEGWREHEARF--RIPELARRAIATPSPCWQHGESLSGKHILLWSEQ 270 + LL G + W +E R+ R + R A P W G SL+GK ILLW+EQ Sbjct: 253 LNLALSLLVLGRLEQAWPLYEWRWEGRSADPYRHATI---PAWNGGSSLAGKRILLWAEQ 309 Query: 271 GQGDCLQFARYLPLVAAQAAQVTLCAPAGLLAVLAPSFAQVRCVAHVSEAGP---HDCHA 327 GQGD +QF+RY+ L+ AQV L PA LLA++ S A + V+ P D Sbjct: 310 GQGDTIQFSRYVALILQAGAQVVLEVPASLLALMH-SLAVPTPLTLVAMGEPLPEVDFQL 368 Query: 328 SLLSLPYLLDLPHPSQAPSAPYLKVDPIRLQQWQQRLAETAAASPRRPRIGLAWAGRQYA 387 L+SLP + + + PYL DP R W++RLA A SP R RIGL +G Sbjct: 369 PLMSLPLVCNTRADDIPAAVPYLCADPARRILWEERLATLAPRSPARMRIGLVCSGNAGN 428 Query: 388 TPHPSRDVPLAEWLPL-FELP-VEVVSLQVEIPLAD-QDVHQELSGRLRTFPLADWADSA 444 R + L+ + PL P ++ +Q ++ AD Q Q+ + D+AD+A Sbjct: 429 VNDARRSIELSRFAPLALARPQLDFFVIQPDLRQADRQWCEQQPGWHWVGAAINDFADTA 488 Query: 445 ALACALDLVISVDTAVVHLAGALGLPCFLPQRLEGEWRWGVQGEQTAWYPSVRLFRQQQR 504 A+ +DLVISVDTA HLAGA+ P ++ +WRW + + WYP+ RLFRQQQ Sbjct: 489 AVLAGMDLVISVDTAAAHLAGAMACPVWIALPYAPDWRWLLNAADSPWYPTARLFRQQQP 548 Query: 505 GQWGSVVEEIVAA 517 G W V+ + AA Sbjct: 549 GAWDDVILTLRAA 561 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.135 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,648,884 Number of extensions: 70492 Number of successful extensions: 305 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 285 Number of HSP's successfully gapped: 4 Length of query: 526 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 436 Effective length of database: 1,193,720 Effective search space: 520461920 Effective search space used: 520461920 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 133 (55.8 bits)