BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0224.p
         (342 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311535|ref|YP_003775627.1| L-aspartate oxidase [Herbaspiri...   687   0.0  
gi|300312277|ref|YP_003776369.1| succinate dehydrogenase flavopr...   188   4e-49

>gi|300311535|ref|YP_003775627.1| L-aspartate oxidase
           [Herbaspirillum seropedicae SmR1]
          Length = 534

 Score =  687 bits (1774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/341 (96%), Positives = 335/341 (98%)

Query: 1   VLATGGAGKVYLYTSNPDSATGDGIAMAWRAGCRVANMEFIQFHPTCLYHPYAKSFLISE 60
           VLATGGAGKVYLYTSNPDSATGDGIAMAWRAGCRVANMEFIQFHPTCLYHPYAKSFLISE
Sbjct: 193 VLATGGAGKVYLYTSNPDSATGDGIAMAWRAGCRVANMEFIQFHPTCLYHPYAKSFLISE 252

Query: 61  ALRGEGALLKLPASAGALAGQRFMPEHDERAELAPRDIVARAIDFEMKKRGLDHVDLDIS 120
           ALRGEGALLKLP SAGA AGQRFMPEHDERAELAPRD+VARAIDFEMKKRGLDHVDLDIS
Sbjct: 253 ALRGEGALLKLPLSAGAAAGQRFMPEHDERAELAPRDVVARAIDFEMKKRGLDHVDLDIS 312

Query: 121 HQSPAFIAEHFPTIQARCLEFGIDITRQPIPVVPAAHYTCGGVVTDMAGRTDLPGLYAVG 180
           HQSPAFIAEHFPTIQARCLEFGIDITRQPIPVVPAAHYTCGGVVTDMAGRTDLPGLYAVG
Sbjct: 313 HQSPAFIAEHFPTIQARCLEFGIDITRQPIPVVPAAHYTCGGVVTDMAGRTDLPGLYAVG 372

Query: 181 ETAYTGLHGANRLASNSLLECLVLGRSAAEDIERELSAGTWRIAEVPQWDESRVSDADEE 240
           ETAYTGLHGANRLASNSLLECLVLGR+AA DIE EL+AG+WR+ EVP WDESRV+DADEE
Sbjct: 373 ETAYTGLHGANRLASNSLLECLVLGRAAAADIEHELAAGSWRVDEVPAWDESRVTDADEE 432

Query: 241 VVIAHNWDELRRFMWNYVSIVRTDKRLERAQHRIRLLKEEIDEYYANFRISRDLLELRNL 300
           VVIAHNWDELRRFMWNYVSIVRTDKRLERAQHRIRLLKEEIDEYYANFRISRDLLELRNL
Sbjct: 433 VVIAHNWDELRRFMWNYVSIVRTDKRLERAQHRIRLLKEEIDEYYANFRISRDLLELRNL 492

Query: 301 VDVAQLIVSSALMRKESRGLHFSQDYPRTLPRATPTILPGR 341
           VDVAQLIVSSALMRKESRGLHFSQDYPRTLPRATPTILPGR
Sbjct: 493 VDVAQLIVSSALMRKESRGLHFSQDYPRTLPRATPTILPGR 533


>gi|300312277|ref|YP_003776369.1| succinate dehydrogenase
           flavoprotein subunit [Herbaspirillum seropedicae SmR1]
          Length = 592

 Score =  188 bits (478), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 128/360 (35%), Positives = 190/360 (52%), Gaps = 48/360 (13%)

Query: 1   VLATGGAGKVYLYTSNPDSATGDGIAMAWRAGCRVANMEFIQFHPTCLYHPYAKSFLISE 60
           + ATGGAG+++  ++N    TGDG+ MA RAG  + +MEF QFHPT +        LI+E
Sbjct: 204 LFATGGAGRIWAASTNAFINTGDGMGMAARAGLPLQDMEFWQFHPTGV---AGAGVLITE 260

Query: 61  ALRGEGALLKLPASAGALAGQRFMPEHDER-AELAPRDIVARAIDFEMKK-RGL----DH 114
            +RGEG +L          G+RFM  +     +LAPRD V+R++D E+K+ RG+    DH
Sbjct: 261 GVRGEGGILINS------NGERFMERYAPTLKDLAPRDFVSRSMDQEIKEGRGVGPHKDH 314

Query: 115 VDLDISHQSPAFIAEHFPTIQARCLEF-GIDITRQPIPVVPAAHYTCGGVVTDMAGRTDL 173
           V LD+ H     I +  P+I     +F  +D T++PIPVVP  HY  GG+ T++ G+   
Sbjct: 315 VLLDLRHIGADTIKKRLPSILEIAHKFANVDATKEPIPVVPTIHYQMGGIPTNIHGQVVA 374

Query: 174 P----------GLYAVGETAYTGLHGANRLASNSLLECLVLGRSAAEDI---------ER 214
           P          G+YA+GE A   +HGANRL +NSLL+ +V GR+A   I          +
Sbjct: 375 PKGGSMKEVVQGMYAIGECACVSVHGANRLGTNSLLDLVVFGRAAGNHIVGSRLQDQSHK 434

Query: 215 ELSAGTW--RIAEVPQWDESRVSDADEEVVIAHNWDELRRFMWNYVSIVRTDKRLERAQH 272
            + AG     +  +   + S  S+  ++V      +++R  M  Y  + RTD  L+    
Sbjct: 435 PIPAGALDRSLERIAHLESSTGSERVQDVA-----NDIRATMQKYCGVFRTDALLQEGYT 489

Query: 273 RIRLLKE-----EIDEYYANFRISR-DLLELRNLVDVAQLIVSSALMRKESRGLHFSQDY 326
           +I  L E        +    F  +R + LEL NL++ A+  ++SA  RKESRG H   DY
Sbjct: 490 KIMELDERRKHVSFKDKSKVFNTARVEALELDNLIETAKATITSAAARKESRGAHAHSDY 549


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,124,074
Number of extensions: 47253
Number of successful extensions: 153
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 2
Length of query: 342
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 256
Effective length of database: 1,212,660
Effective search space: 310440960
Effective search space used: 310440960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)