BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0222.p
         (385 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311536|ref|YP_003775628.1| phosphoribosylglycinamide formy...   760   0.0  
gi|300310010|ref|YP_003774102.1| phosphoribosylaminoimidazole ca...    95   9e-21

>gi|300311536|ref|YP_003775628.1| phosphoribosylglycinamide
           formyltransferase 2 protein [Herbaspirillum seropedicae
           SmR1]
          Length = 403

 Score =  760 bits (1963), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/385 (96%), Positives = 382/385 (99%)

Query: 1   MLLGSGELGKEVIIALQRLGVEVIAVDRYENAPGQQVAHRAHVINMTDGAALAALIEQEQ 60
           MLLGSGELGKEVIIALQRLGVEVIAVDRYENAPG QVAHRAHVINMTDGAALAALIEQE+
Sbjct: 19  MLLGSGELGKEVIIALQRLGVEVIAVDRYENAPGHQVAHRAHVINMTDGAALAALIEQEK 78

Query: 61  PDLIVPEIEAIATETLVKLEEAGRARVIPTARAAWLTMNREGIRRLAGETLGLATSPYRF 120
           PDLIVPEIEAIATETLVKLEEAG ARVIPTARAAWLTMNREGIRRLAGETLGLATSPYRF
Sbjct: 79  PDLIVPEIEAIATETLVKLEEAGLARVIPTARAAWLTMNREGIRRLAGETLGLATSPYRF 138

Query: 121 ADSLDELKAAIDQIGFPCVIKPVMSSSGKGQSKIDGPDEIEAAWNYAAAGGRVDSGRVIV 180
           ADSL+ELKAAIDQIG+PCVIKPVMSSSGKGQSKIDGPDEIE+AWNYAAAGGRVD+GRVIV
Sbjct: 139 ADSLEELKAAIDQIGYPCVIKPVMSSSGKGQSKIDGPDEIESAWNYAAAGGRVDAGRVIV 198

Query: 181 EGFIDFDYEITLLTVRSLNENGDTITSFCDPIGHVQVKGDYVESWQPHPMPGAALEKARD 240
           EGFIDFDYEITLLTVRSLNENGDT+TSFCDPIGHVQVKGDYVESWQPHPMPGAALEKARD
Sbjct: 199 EGFIDFDYEITLLTVRSLNENGDTVTSFCDPIGHVQVKGDYVESWQPHPMPGAALEKARD 258

Query: 241 IARKVTENLGGLGLFGVELFVKGDMVWFSEVSPRPHDTGMVTMVSQVQSEFELHAKAILG 300
           IARKVTENLGGLGLFGVELFVKGDMVWFSEVSPRPHDTGMVTMVSQVQSEFELHAKAILG
Sbjct: 259 IARKVTENLGGLGLFGVELFVKGDMVWFSEVSPRPHDTGMVTMVSQVQSEFELHAKAILG 318

Query: 301 LPVNTALRSPGASAVIYGQHDARGIAFDGVAEALRIPGADIRLFGKPESFARRRMGVALA 360
           LPVNTALR+PGASAVIYGQH+ARGIAFDGVAEALRIPGA+IRLFGKPESFARRRMGVALA
Sbjct: 319 LPVNTALRTPGASAVIYGQHEARGIAFDGVAEALRIPGAEIRLFGKPESFARRRMGVALA 378

Query: 361 SGDSVETARIRAKQAAAKVKPVIPQ 385
           S D+VETARIRAKQAAAKVKPVIP+
Sbjct: 379 SADNVETARIRAKQAAAKVKPVIPE 403


>gi|300310010|ref|YP_003774102.1| phosphoribosylaminoimidazole
           carboxylase ATPase subunit [Herbaspirillum seropedicae
           SmR1]
          Length = 401

 Score = 95.1 bits (235), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 107/391 (27%), Positives = 182/391 (46%), Gaps = 34/391 (8%)

Query: 2   LLGSGELGKEVIIALQRLGVEVIAVDRYENAPGQQVAHRAHVINMTDGAALAALIEQEQP 61
           ++G G+LG+    A Q +G +V  ++   + P  QVA R       DG ALA L      
Sbjct: 24  VMGGGQLGRMFAHAAQSMGFKVAVLEADADCPAGQVADRLINAGYDDGPALAEL--GALC 81

Query: 62  DLIVPEIEAIATETLVKLEEAGRARVIPTARAAWLTMNREGIRRL---AGETLGLATSPY 118
             I  E E ++ ++L  L  A +  V P A    +  +R   +      G   G+  +P+
Sbjct: 82  AAITTEFENVSAKSLATL--AAQTFVAPAASGVSIAQDRTAEKAFFTECGSQSGVLPAPH 139

Query: 119 RFADSLDELKAAIDQIGFPCVIKPV-MSSSGKGQSKIDGPDEIEAAWNYAAAGGRVDSGR 177
              +S  +++  +D    P ++K   M   GKGQ ++   +E+ AA  +A+ GG      
Sbjct: 140 LVINSEADIEG-LDANLLPGILKTARMGYDGKGQVRVRSVEEVRAA--FASMGGVT---- 192

Query: 178 VIVEGFIDFDYEITLLTVRSLNENGDTITSFCDPIG-HVQVKGDYVESWQPHP-MPGAAL 235
            ++E  +   YE+++L  R    +G  +     PI  +V   G    +  P P +   A 
Sbjct: 193 CVLEKMLPLAYEVSVLVAR--GHDGQAVVY---PIAENVHRDGILFTTTVPGPNIKADAA 247

Query: 236 EKARDIARKVTENLGGLGLFGVELFVKGD-MVWFSEVSPRPHDTGMVTMVSQVQSEFELH 294
            +A+  A ++   L  +G+  +E FV  D  +  +E++PRPH++G  T+ + V S+FE  
Sbjct: 248 ARAQQAALQIIGALQYVGVLCIEFFVLEDGALVVNEMAPRPHNSGHYTIDACVTSQFEQQ 307

Query: 295 AKAILGLPV-NTALRSPGASAVIYGQ-------HDARGIAFDGVAEALRIPGADIRLFGK 346
           A+A+  LP+ +T   SP     I G           R  A+D V   L +PGA + L+GK
Sbjct: 308 ARAMARLPLGDTRQHSPSVMLNILGDVWYEGDTDTQREPAWDQV---LALPGAHVHLYGK 364

Query: 347 PESFARRRMGVALASGDSVETARIRAKQAAA 377
            E+   R+MG    +G ++  A+ +   A A
Sbjct: 365 AEARRGRKMGHVTFTGATLADAQQQLTAACA 395


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.136    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,251,318
Number of extensions: 52753
Number of successful extensions: 218
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 2
Length of query: 385
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 298
Effective length of database: 1,207,925
Effective search space: 359961650
Effective search space used: 359961650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)