BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0218.p
         (451 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311540|ref|YP_003775632.1| hypothetical protein Hsero_2225...   797   0.0  

>gi|300311540|ref|YP_003775632.1| hypothetical protein Hsero_2225
           [Herbaspirillum seropedicae SmR1]
          Length = 451

 Score =  797 bits (2059), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/451 (89%), Positives = 430/451 (95%)

Query: 1   MTQDPQRTVRIGAGAGYSGDRIEPAAELAAHGQLDYLIFECLAERTIAIGQQARLADPGK 60
           MT DPQR VRIGAGAGYSGDRIEPAAELA  G+LDYLIFECLAERTIAIGQQARLADP K
Sbjct: 1   MTHDPQRKVRIGAGAGYSGDRIEPAAELAERGELDYLIFECLAERTIAIGQQARLADPTK 60

Query: 61  GYDPLLAERMHAVLKTCATQGIRIITNMGAANPLAAAQRVREIARELGLSGLKVAAVAGD 120
           GYDPLLAERMHAVLKTCA +G+RIITNMGAANP AAAQRVREIAR LGL+ LKVAAV GD
Sbjct: 61  GYDPLLAERMHAVLKTCADKGVRIITNMGAANPAAAAQRVREIARTLGLAHLKVAAVTGD 120

Query: 121 DVLEAVQQDEWRIEDNGQPVASLGESLISANAYLGIAPIVEALQAGAQVIITGRVADPAL 180
           DVL+AVQ+ ++RIEDNGQPV+SLGE LISANAYLG+API+EALQAGA VIITGRVADPAL
Sbjct: 121 DVLQAVQEGDFRIEDNGQPVSSLGERLISANAYLGVAPILEALQAGADVIITGRVADPAL 180

Query: 181 VLAPLVHEFGWAPDDWDKLGQGTLIGHLLECAGQITGGYFADPGKKDVAGLARLGFPIGE 240
           VLAPLVHEFGWA DDWDKLGQGTL+GHLLECAGQITGGYFADPGKKDVAGLARLGFPIGE
Sbjct: 181 VLAPLVHEFGWAADDWDKLGQGTLVGHLLECAGQITGGYFADPGKKDVAGLARLGFPIGE 240

Query: 241 VKADGSAIITKVAGSGGQVTARTCKEQLLYEIHDPSAYFTPDVIADFSQVRIEEVGPDRV 300
           V ADGSA+ITKVAGSGGQVTA+TCKEQLLYEIHDPSAY+TPDV+ADFSQV+I E+GPDRV
Sbjct: 241 VSADGSAVITKVAGSGGQVTAQTCKEQLLYEIHDPSAYYTPDVVADFSQVQITEIGPDRV 300

Query: 301 AVTGGRGRARPQTLKTTLGYRDSFIGEGQISYAGPGAQARAQLAGEIVRERLALTGVQTE 360
           AV+GGRGRARP TLKTTLGYRDSFIGEGQISYAGPGAQARAQLA EIVRERLALTGV+T+
Sbjct: 301 AVSGGRGRARPATLKTTLGYRDSFIGEGQISYAGPGAQARAQLAAEIVRERLALTGVETD 360

Query: 361 ELRVDLIGINAIAGEQMSAHAPEPHEVRLRVTGRTASMKEAVRIGNEVETLYTNGPAGGG 420
           ELR+DLIG+NAIAG QMSA APEP+EVRLRV+GRTASM++AVRIGNEVETLYTNGPAGGG
Sbjct: 361 ELRLDLIGMNAIAGPQMSAGAPEPYEVRLRVSGRTASMQQAVRIGNEVETLYTNGPAGGG 420

Query: 421 GATKSAREVIAVLSLLLPRTLVHPSVFIEEA 451
           GATKSAREVIAVLSLLLPR+LVHPSV IEEA
Sbjct: 421 GATKSAREVIAVLSLLLPRSLVHPSVHIEEA 451


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.136    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,537,580
Number of extensions: 70230
Number of successful extensions: 291
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 291
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 363
Effective length of database: 1,203,190
Effective search space: 436757970
Effective search space used: 436757970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)