BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0215.p
         (341 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311543|ref|YP_003775635.1| major facilitator superfamily p...   640   0.0  

>gi|300311543|ref|YP_003775635.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 553

 Score =  640 bits (1650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/341 (97%), Positives = 339/341 (99%)

Query: 1   MSMNESPAFLKMKAEGKTSKAPLTEAFGQWKNLKLVILALVGLTAGQAVVWYTGQFYALF 60
           MSMNESPAFLKMKAEGKTSKAPLTEAFGQWKNLKLVILALVGLTAGQAVVWYTGQFYALF
Sbjct: 213 MSMNESPAFLKMKAEGKTSKAPLTEAFGQWKNLKLVILALVGLTAGQAVVWYTGQFYALF 272

Query: 61  FLTQTLKVDGPTANILIAAALLLATPFFLFFGSLSDKIGRKPIILGGCLIAAVTYFPIFN 120
           FLTQTLKVDGPTANILIAAALLLATPFFLFFGSLSDKIGRKPIILGGCLIAAVTYFPIF+
Sbjct: 273 FLTQTLKVDGPTANILIAAALLLATPFFLFFGSLSDKIGRKPIILGGCLIAAVTYFPIFS 332

Query: 121 GLTHFANPALEAALQKSPVIVTADPASCQFQFNPTGTKKFTSSCDIVKAKLSAASVNYQN 180
           GLTHFANPALEAALQKSPVIVTADPASCQFQFNPTGTKKFTSSCDIVKAKLSAASVNYQN
Sbjct: 333 GLTHFANPALEAALQKSPVIVTADPASCQFQFNPTGTKKFTSSCDIVKAKLSAASVNYQN 392

Query: 181 VAGAPGSVATVKIGDRVITSYDAAGLSKEDAAAKDKELSKALADDIKAAGYPSKADPEQI 240
           VAGAPGSVATVKIGDR+ITSYDAAGLSKEDAAAKDK+LSK LADDIKAAGYPSKADPEQ+
Sbjct: 393 VAGAPGSVATVKIGDRIITSYDAAGLSKEDAAAKDKQLSKDLADDIKAAGYPSKADPEQM 452

Query: 241 NKPMVLLLLFILVIYVTMVYGPIAACLVEMFPTRIRYTSMSMPYHIGNGWFGGLLPTTSF 300
           NKPMVLLLLFILVIYVTMVYGPIAACLVEMFPTRIRYTSMSMPYHIGNGWFGGLLPTTSF
Sbjct: 453 NKPMVLLLLFILVIYVTMVYGPIAACLVEMFPTRIRYTSMSMPYHIGNGWFGGLLPTTSF 512

Query: 301 ALVAFKGDIYYGLWYPIVISLITVVIGLLFVKETVRNNIHE 341
           ALVAFKGDIYYGLWYPIVI++IT VIG+LFVKETVRNNIH+
Sbjct: 513 ALVAFKGDIYYGLWYPIVIAMITFVIGMLFVKETVRNNIHD 553


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 930,438
Number of extensions: 33797
Number of successful extensions: 142
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 2
Length of query: 341
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 255
Effective length of database: 1,212,660
Effective search space: 309228300
Effective search space used: 309228300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)