BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0213.p
         (407 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311544|ref|YP_003775636.1| secreted glycine/D-amino acid o...   675   0.0  

>gi|300311544|ref|YP_003775636.1| secreted glycine/D-amino acid
           oxidase [Herbaspirillum seropedicae SmR1]
          Length = 400

 Score =  675 bits (1741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/345 (94%), Positives = 337/345 (97%)

Query: 1   MNNSLSEHDPQHFDLAVVGSGILGLAHAYAAVKRGLKVAVFERTGTPLGASVRNFGMGLV 60
           M+NSLSEHDPQHFDLAVVGSGILGLAHAYAAVKRGLKVAVFERTGTPLGASVRNFGMGLV
Sbjct: 1   MSNSLSEHDPQHFDLAVVGSGILGLAHAYAAVKRGLKVAVFERTGTPLGASVRNFGMGLV 60

Query: 61  TGQPPGIMLDLARESRALWLHLAARAHFSAREAGTLLFARSEAEHDVLLEFMTVRARQYD 120
           TGQPPGIMLDLARESRA+WLHLAARAHFSAREAGTLLFARSEAEHDVL EFM VRARQYD
Sbjct: 61  TGQPPGIMLDLARESRAIWLHLAARAHFSAREAGTLLFARSEAEHDVLQEFMMVRARQYD 120

Query: 121 YRASLLEGDKLDTLYNGRFSHHRSALHGTEDLQLYSREAMPALVAYLHSQGVHFRFNTLV 180
           YRASLLEGDKL+TLYNGRF HHRS LHGTEDLQLYSREAMPALVAYLHSQGVHFRFNTLV
Sbjct: 121 YRASLLEGDKLNTLYNGRFRHHRSVLHGTEDLQLYSREAMPALVAYLHSQGVHFRFNTLV 180

Query: 181 HGTANGHLSTTAGEFRAERVVVCSGHDYLTLFADRLQPMNLKQCRLQMLRLKTEETVPLT 240
           HG  +G LSTTAGEFRAERVVVCSGHDYLTLFADRLQPMNLKQCRLQMLRLK+EET+PLT
Sbjct: 181 HGAGDGRLSTTAGEFRAERVVVCSGHDYLTLFADRLQPMNLKQCRLQMLRLKSEETLPLT 240

Query: 241 HAVLTGLSCTHYGAFSDLPTARAVHAEIEANAPLLNKHGIHLLVSPTPYQELIVGDSHHY 300
           HAVLTGLSCTHYGAFSDLPTARAVHAEIEAN PLLNKHGIHLLVSPTPYQELIVGDSHHY
Sbjct: 241 HAVLTGLSCTHYGAFSDLPTARAVHAEIEANTPLLNKHGIHLLVSPTPYQELIVGDSHHY 300

Query: 301 GTDSPPFNSEEIDELLIGLVEHTLASRVQVIERWQGVYGSKGPGP 345
           GTD+PPFNSEEIDELL+GLVEHTLA+RV+VIERWQGVYGSKGPGP
Sbjct: 301 GTDAPPFNSEEIDELLLGLVEHTLATRVKVIERWQGVYGSKGPGP 345


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,347,309
Number of extensions: 56947
Number of successful extensions: 180
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 320
Effective length of database: 1,207,925
Effective search space: 386536000
Effective search space used: 386536000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)