BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0211.p (585 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311546|ref|YP_003775638.1| Fe3+ ABC transporter permease [... 948 0.0 gi|300309934|ref|YP_003774026.1| sulfate ABC transporter permeas... 69 1e-12 gi|300310985|ref|YP_003775077.1| sulfate ABC transporter permeas... 63 6e-11 gi|300311432|ref|YP_003775524.1| molybdate ABC transporter perme... 59 7e-10 >gi|300311546|ref|YP_003775638.1| Fe3+ ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 578 Score = 948 bits (2450), Expect = 0.0, Method: Compositional matrix adjust. Identities = 519/576 (90%), Positives = 540/576 (93%), Gaps = 3/576 (0%) Query: 10 TSPMPALARDHTEAGAVSVRRSATDRSQWLPGAMKWLLLALLLLGLGGPLLFILAQAVLT 69 ++P+P L+ E + S DRSQWLP +KWLLL LL LGL GPLLFILAQAVLT Sbjct: 6 SAPLPTLS---AETSTSTRPASVPDRSQWLPALLKWLLLMLLALGLVGPLLFILAQAVLT 62 Query: 70 PEGNWAGSQPFVTLFANINFLPMLGRSLWVSTVTAVVTVPLAYVFAYALQRTCIPFKGLW 129 P G WAGS+PF LFANINFLPMLGRSLWVS +TAVVTVPLAYVFAYALQRTCIP KGLW Sbjct: 63 PAGEWAGSRPFAQLFANINFLPMLGRSLWVSAMTAVVTVPLAYVFAYALQRTCIPGKGLW 122 Query: 130 RGIGLLPLLAPSLLPGIALIYLFGNQGLFKEWMDGSIYGFWGILLGEVFYTFPHAMMILL 189 RGIGLLPLLAPSLLPGIALIYLFGNQGLFKEWMDGSIYGFWGILLGEVFYTFPHA+MILL Sbjct: 123 RGIGLLPLLAPSLLPGIALIYLFGNQGLFKEWMDGSIYGFWGILLGEVFYTFPHALMILL 182 Query: 190 SALSQADGRLYDAAHAMGASRWRIFTTVTLPATRYGIFGALCLVFTLTITDFGVPKITGG 249 SALSQADGRLYDAA AMGASRWRIFTTVTLPATRYGIFGALCLVFTLTITDFGVPKITGG Sbjct: 183 SALSQADGRLYDAAQAMGASRWRIFTTVTLPATRYGIFGALCLVFTLTITDFGVPKITGG 242 Query: 250 AYSVLAVEAYKAVVGQQQFGRGALIGLLLLVPALLTFALDAWLQRRQRATMSSRSEAYVP 309 AYSVLAVEAYKAVVGQQQFGRGALIGLLLLVPALLTF LDAWLQRRQRA+MSSRSE YVP Sbjct: 243 AYSVLAVEAYKAVVGQQQFGRGALIGLLLLVPALLTFTLDAWLQRRQRASMSSRSETYVP 302 Query: 310 RPDWRRDGINLLAVALIAAAVLMMIVVAMGASLVKLWPYNLQLTLQHYDFDNMDGGGWLA 369 +PDWRRDG NLLAVALIA+A+LMMIVVAMGASLVKLWPYNLQLTLQHYDFDNMDGGGWLA Sbjct: 303 QPDWRRDGANLLAVALIASAILMMIVVAMGASLVKLWPYNLQLTLQHYDFDNMDGGGWLA 362 Query: 370 YWNSLKLACGTSVAGTLVIFTGAWLMEKTRGQAWLAPLLRMLSFLPMAVPGLVLGLGSLL 429 YWNSL+LACGTSVAGTL+IF GAWLMEKTRGQAWL+ LLRML FLPMAVPGLVLGLGSLL Sbjct: 363 YWNSLRLACGTSVAGTLLIFCGAWLMEKTRGQAWLSTLLRMLCFLPMAVPGLVLGLGSLL 422 Query: 430 FFNHPSNPFNFLYGTMTLLVLCSIVHFYTTAHLTAVTALKQLDPEFEAASLSLKVPLLQT 489 FFNHP+NPFNFLYGTMTLLVLC +VHFYTTA LTAVTALKQLDPEFEAASLSLKVPLL+T Sbjct: 423 FFNHPANPFNFLYGTMTLLVLCCVVHFYTTAQLTAVTALKQLDPEFEAASLSLKVPLLKT 482 Query: 490 FLRVTVPLCLPQMLEIFRYLFVSSMTTVSAVIFLYRPDTVLASVAVLNMDDAGDVGPAAA 549 F+RVTVPLCLPQ+LEIFRYLFVSSMTTVSAVIFLYRPDTVLASVAVLNMDDAGDVGPAAA Sbjct: 483 FIRVTVPLCLPQLLEIFRYLFVSSMTTVSAVIFLYRPDTVLASVAVLNMDDAGDVGPAAA 542 Query: 550 MSTLILLTSAAASLLMHLAGSRWLARAQAWRRGRAH 585 MSTLILLTSAAASLLMHL G RWLARAQAWRRGRAH Sbjct: 543 MSTLILLTSAAASLLMHLGGRRWLARAQAWRRGRAH 578 >gi|300309934|ref|YP_003774026.1| sulfate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 291 Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 49/210 (23%), Positives = 92/210 (43%), Gaps = 7/210 (3%) Query: 76 GSQPFVTLFANINFLPMLGRSLWVSTVTAVVTVPLAYVFAYALQRTCIPFKGLWRGIGLL 135 G+ ++++ N ++ L +L +S T+ ++ LQR P + L + Sbjct: 59 GAMAYLSVLTNRHYFASLVSTLALSAAVTAATLAISVFVGLFLQRHRFPGQALLLAMLTF 118 Query: 136 PLLAPSLLPGIALIYLFGNQGLFKEWMDGSI-------YGFWGILLGEVFYTFPHAMMIL 188 PL P ++ G +I L G QGL +G Y G+ LG ++++ P ++ + Sbjct: 119 PLAFPGVVVGFMVIMLAGRQGLIGALTNGLFGESLVFAYSLAGLFLGYLYFSIPRVILTV 178 Query: 189 LSALSQADGRLYDAAHAMGASRWRIFTTVTLPATRYGIFGALCLVFTLTITDFGVPKITG 248 ++A + D L +AA ++GA W++ V LPA + + + F ++ FG Sbjct: 179 VAAAEKLDPSLEEAARSLGARPWQVLLHVVLPALLPALVSSGAICFATSVGAFGTAFTLA 238 Query: 249 GAYSVLAVEAYKAVVGQQQFGRGALIGLLL 278 VL + Y G F A + ++L Sbjct: 239 ANIDVLPMTIYNEFTGYANFATAASLSIVL 268 >gi|300310985|ref|YP_003775077.1| sulfate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 299 Score = 63.2 bits (152), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 70/158 (44%), Gaps = 12/158 (7%) Query: 102 VTAVVTVPLAYVFAYALQRTCIPFKGLWRGIGLL------PLLAPSLLPGIALIYLFGNQ 155 +TA + VPL VF A F+ +RG LL P ++ G+ + LFG Q Sbjct: 84 ITAAIAVPLNLVFGVAAAWAIAKFE--FRGKNLLLTLIDLPFSVSPVISGLIYVLLFGLQ 141 Query: 156 GLFKEWMDGS----IYGFWGILLGEVFYTFPHAMMILLSALSQADGRLYDAAHAMGASRW 211 G W+ ++ GI+L +F TFP L+ + +AA +GAS W Sbjct: 142 GYLGPWLREHDIKILFAVPGIVLATIFVTFPFVARELIPLMQSQGSEEEEAALVLGASGW 201 Query: 212 RIFTTVTLPATRYGIFGALCLVFTLTITDFGVPKITGG 249 R F VTLP ++G+ + L + +FG + G Sbjct: 202 RTFWHVTLPNIKWGLLYGVILCNARAMGEFGAVSVVSG 239 >gi|300311432|ref|YP_003775524.1| molybdate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 224 Score = 59.3 bits (142), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 8/175 (4%) Query: 96 SLWVSTVTAVVTVPLAYVFAYALQRTCIPFKGLWRGIGLLPLLAPSLLPGIALIYLFGNQ 155 SL V+ + ++ + L AY L R + + LPL+ P + G L+ LFG + Sbjct: 11 SLKVAGLATLLNLVLGVAAAYGLSRWRSALRDFIDSVLTLPLVLPPTVLGYYLLVLFGRR 70 Query: 156 GLFKEWMDGS----IYGFWGILLGEVFYTFPHAMMILLSALSQADGRLYDAAHAMGASRW 211 G W++ ++ + G +L FP + +A D ++ DAA +G S Sbjct: 71 GALGAWLERMGIELVFTWQGAVLASTVVAFPLVLKSARAAFESVDHQMEDAARVLGVSEA 130 Query: 212 RIFTTVTLPATRYGIFGALCLVFTLTITDFGVPKITGGAY----SVLAVEAYKAV 262 +F V+LP GI + L F + +FG + G L+V Y+AV Sbjct: 131 GVFFRVSLPLAMRGIMAGVLLAFARALGEFGATLMVAGNLPGRTQTLSVAIYEAV 185 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.327 0.139 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,556,422 Number of extensions: 52437 Number of successful extensions: 362 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 359 Number of HSP's successfully gapped: 13 Length of query: 585 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 495 Effective length of database: 1,193,720 Effective search space: 590891400 Effective search space used: 590891400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 133 (55.8 bits)