BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0210.p (374 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311547|ref|YP_003775639.1| ABC transporter ATPase [Herbasp... 580 e-167 gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transport... 248 4e-67 gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC trans... 245 4e-66 gi|300313814|ref|YP_003777906.1| spermidine/putrescine ABC trans... 235 4e-63 gi|300312386|ref|YP_003776478.1| sugar ABC transporter ATPase [H... 234 8e-63 >gi|300311547|ref|YP_003775639.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 359 Score = 580 bits (1494), Expect = e-167, Method: Compositional matrix adjust. Identities = 291/348 (83%), Positives = 321/348 (92%) Query: 27 FLSVRGIDKRFGAFTALDGVSLEVRQGEMVCLLGPSGCGKTTLLRTIAGLERQDAGQIFA 86 FLSVR ++KRFG+FTALD VSLEVR+GEMVCLLGPSGCGKTTLLRTIAGLERQD+G++ A Sbjct: 12 FLSVREVEKRFGSFTALDRVSLEVRRGEMVCLLGPSGCGKTTLLRTIAGLERQDSGRLHA 71 Query: 87 GGRDISDLPPQSRDYGILFQSYALFPNLTVADNVAYGLRNMKRQARQERVTEMLSMVGLA 146 GRDIS LPPQ+RDYGILFQSYALFPNL+VADNVAYGL M RQ ++ERVTEMLSMVGL Sbjct: 72 DGRDISQLPPQARDYGILFQSYALFPNLSVADNVAYGLGRMSRQQKRERVTEMLSMVGLD 131 Query: 147 GSQSKYPGQLSGGQQQRVALARALAPSPSLLLLDEPLSALDAQVREHLQLEIRRLQKQFR 206 GSQ KYPGQLSGGQQQRVALARALAPSPSLLLLDEPLSALDAQVREHLQLEIRRLQKQFR Sbjct: 132 GSQDKYPGQLSGGQQQRVALARALAPSPSLLLLDEPLSALDAQVREHLQLEIRRLQKQFR 191 Query: 207 ITTLMVTHDQEEAMVMADRIAVMQHGRIEQFGTPAEIYRRPATPFVADFIGHANWLPFSR 266 ITTLMVTHDQEEAMVMADRIAVMQHGRIEQFGTP +IYRRPATPFVADFIG ANWLPF+R Sbjct: 192 ITTLMVTHDQEEAMVMADRIAVMQHGRIEQFGTPEQIYRRPATPFVADFIGQANWLPFTR 251 Query: 267 ISGSQVTVGALRFEVRPEEAELQTGRLFCRPEAVELFATESCANRFQARVIDRIYLGNRY 326 +SGSQV VG L E++P+E++ +GRLFCRPEAV+LF+ ESCANRF ARV+DRIYLG+RY Sbjct: 252 LSGSQVAVGGLHLEIQPDESDRASGRLFCRPEAVQLFSDESCANRFLARVVDRIYLGDRY 311 Query: 327 RLALAADALPGQTLLADVSGESHDRLAAQPAHDGLWVALPRQALQVFA 374 RLALAADALPGQTLLADVS ++H+R+A+ DGLWV LPRQ+LQVFA Sbjct: 312 RLALAADALPGQTLLADVSSQAHERVASLDTQDGLWVTLPRQSLQVFA 359 >gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 359 Score = 248 bits (634), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 134/283 (47%), Positives = 181/283 (63%), Gaps = 10/283 (3%) Query: 28 LSVRGIDKRFGAFTALDGVSLEVRQGEMVCLLGPSGCGKTTLLRTIAGLERQDAGQIFAG 87 + V I KRFG+FTAL+ VSL GE+ LLGPSGCGKTTLLR IAGLE D+GQ+ Sbjct: 3 IEVHHIQKRFGSFTALNDVSLNFPAGELTALLGPSGCGKTTLLRIIAGLESPDSGQVLLD 62 Query: 88 GRDISDLPPQSRDYGILFQSYALFPNLTVADNVAYGLRNMKRQAR------QERVTEMLS 141 G D S + R G +FQ YALF ++TV +N+A+GLR R R +E+V +L Sbjct: 63 GEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVKPRSQRPSEAVIREKVKRLLE 122 Query: 142 MVGLAGSQSKYPGQLSGGQQQRVALARALAPSPSLLLLDEPLSALDAQVREHLQLEIRRL 201 +V L +YP QLSGGQ+QR+ALARALA P +LLLDEP ALDA+VR+ L+ +RRL Sbjct: 123 LVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLRRL 182 Query: 202 QKQFRITTLMVTHDQEEAMVMADRIAVMQHGRIEQFGTPAEIYRRPATPFVADFIGHANW 261 + +T++ VTHDQEEA+ +AD++ +M G++EQ GTP +Y PA+PFV F+G+ N Sbjct: 183 HDELHVTSIFVTHDQEEALEVADQVVLMNKGQVEQIGTPEAVYNHPASPFVYGFLGNVN- 241 Query: 262 LPFSRISGSQVTVGALRFEVRPEEAELQ--TGRLFCRPEAVEL 302 L R+ + G RFE P ++ G F RP +++ Sbjct: 242 LFHGRLHEGVLDAGGARFEA-PGHDNIRDAAGVGFVRPHDLDV 283 >gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 245 bits (626), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 136/297 (45%), Positives = 191/297 (64%), Gaps = 5/297 (1%) Query: 42 ALDGVSLEVRQGEMVCLLGPSGCGKTTLLRTIAGLERQD-AGQIFAGGRDISDLPPQSRD 100 AL + L++ GE + LLGPSGCGKTT LR IAGLE D G++ G D++ LP + R Sbjct: 25 ALQPLDLQIHPGETLVLLGPSGCGKTTTLRMIAGLEFPDEGGRVLFGEEDVTMLPIEKRG 84 Query: 101 YGILFQSYALFPNLTVADNVAYGLRNMKRQA--RQERVTEMLSMVGLAGSQSKYPGQLSG 158 G++FQ+YALFPN++V +N+AYG++ K A R ERV +L MV L G + QLSG Sbjct: 85 VGMVFQNYALFPNMSVGENIAYGMKIRKIAAGERAERVERLLEMVHLQGLSHRRVDQLSG 144 Query: 159 GQQQRVALARALAPSPSLLLLDEPLSALDAQVREHLQLEIRRLQKQFRITTLMVTHDQEE 218 GQ+QRVALARALA P +LLLDEPL+ALDA++RE ++ ++ +L + IT + VTHDQ E Sbjct: 145 GQKQRVALARALAMEPRVLLLDEPLTALDAKLREAVRSDLNKLLRSLGITAIYVTHDQGE 204 Query: 219 AMVMADRIAVMQHGRIEQFGTPAEIYRRPATPFVADFIGHANWLPFSRISGSQVTVGALR 278 AM + DRI VM+ G+I Q GTP EIY PA FVA+FIG N + ++G ++ + Sbjct: 205 AMALGDRIVVMERGKISQIGTPQEIYYHPANDFVAEFIGAMNRVD-GIVAGDRLQLPTGT 263 Query: 279 FEVRPEEAELQTGRLFCRPEAVELF-ATESCANRFQARVIDRIYLGNRYRLALAADA 334 + P+ Q + RPE VE+ TE+ A+ + ++I+ +LG+R R + A Sbjct: 264 LPLPPDAVAGQPAQALFRPEDVEVIDITEADAHCLRGKLINTFFLGDRTRFEIEIGA 320 >gi|300313814|ref|YP_003777906.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 362 Score = 235 bits (600), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 157/370 (42%), Positives = 217/370 (58%), Gaps = 35/370 (9%) Query: 28 LSVRGIDKRFG----AFTALDGVSLEVRQGEMVCLLGPSGCGKTTLLRTIAGLERQDAGQ 83 LSV + +G A L GVS+E+++GE+V LLGPSG GKTTLLR +AGLE AG Sbjct: 4 LSVNDLHLDYGTGAHANPILKGVSMELQRGEVVALLGPSGSGKTTLLRAVAGLESPKAGA 63 Query: 84 IFAGGRDISD------LPPQSRDYGILFQSYALFPNLTVADNVAYGLRNMKRQARQ--ER 135 I G R + D +P + R+ G++FQSYAL+P+ TVADNVAYGL+ K + + R Sbjct: 64 IDIGKRRVFDGARNFEMPAEERNLGLVFQSYALWPHKTVADNVAYGLKLRKTPSGEIATR 123 Query: 136 VTEMLSMVGLAGSQSKYPGQLSGGQQQRVALARALAPSPSLLLLDEPLSALDAQVREHLQ 195 V +LS +GL +YP QLSGGQQQRVA+ARAL +P ++LLDEPLS LDA++RE + Sbjct: 124 VKAVLSQLGLGHLGERYPHQLSGGQQQRVAIARALVYNPQVILLDEPLSNLDAKLREEAR 183 Query: 196 LEIRRLQKQFRITTLMVTHDQEEAMVMADRIAVMQHGRIEQFGTPAEIYRRPATPFVADF 255 +R L + ++ LMVTHDQ EAM ++DRI ++ +GRIEQ GTP +Y+ P T F A+F Sbjct: 184 AFLRELIVRLGLSALMVTHDQGEAMAISDRILLLNNGRIEQQGTPQSMYQAPNTLFTAEF 243 Query: 256 IGHANWLPFSRIS--GSQVTV---GAL-------RFEVRPEEAELQTGRLFCRPEAVELF 303 +G N L +S G +VTV G R +VRP E TG R E V + Sbjct: 244 MGSNNKLAAEVLSREGERVTVKLDGGTAVATLRGRSDVRP--GEQLTG--IIRVEQVRI- 298 Query: 304 ATESCANRFQARVIDRIYLGNRYRLALAADALPGQTLLADVSGESHDRLAAQPAHDGLWV 363 + E+ N + + +YLG+R+ D P ++ + + RL W+ Sbjct: 299 SGEASDNAIRLPLSTCMYLGDRWECLFKVDGGPAGSV--GLRAYAPQRL----DQGEYWL 352 Query: 364 ALPRQALQVF 373 +LP Q+L F Sbjct: 353 SLPEQSLWAF 362 >gi|300312386|ref|YP_003776478.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 349 Score = 234 bits (597), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 132/298 (44%), Positives = 183/298 (61%), Gaps = 18/298 (6%) Query: 28 LSVRGIDKRFGAFTALDGVSLEVRQGEMVCLLGPSGCGKTTLLRTIAGLERQDAGQIFAG 87 +S++G+ K +G A+ + EV+ G+ LLGPSGCGK+T LR IAGL++ +G I G Sbjct: 4 ISLQGVCKHWGEAQAVRNIDFEVKAGQFTVLLGPSGCGKSTTLRLIAGLDKPSSGSIHIG 63 Query: 88 GRDISDLPPQSRDYGILFQSYALFPNLTVADNVAYGLRNMK--RQARQERVTEMLSMVGL 145 GRD++ LPP R ++FQSYALFP+L+V DN+ +G+R K R + R+ + ++GL Sbjct: 64 GRDVTQLPPAQRKISMVFQSYALFPHLSVRDNILFGVRVRKEPRAGYETRLKRVADILGL 123 Query: 146 AGSQSKYPGQLSGGQQQRVALARALAPSPSLLLLDEPLSALDAQVREHLQLEIRRLQKQF 205 A + P QLSGGQQQRVAL RA+ + L+DEPLS LDAQ+R+ ++ EIR LQ+Q Sbjct: 124 AHLLERRPAQLSGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREIRALQQQL 183 Query: 206 RITTLMVTHDQEEAMVMADRIAVMQHGRIEQFGTPAEIYRRPATPFVADFIGH--ANWLP 263 +T + VTHDQ EAM MAD++ +++ GRIEQ PA++Y +PAT F A FIG N LP Sbjct: 184 NMTMVYVTHDQTEAMSMADQVILLREGRIEQDAAPADLYAQPATAFAARFIGTPPMNLLP 243 Query: 264 FS------RISGSQVTVGAL-----RFEVRPEEAELQTGRLFCRP---EAVELFATES 307 ISGS V + L + +RPE L P E VE F ++ Sbjct: 244 LEPHAEGLVISGSDVILRDLGQTPWQLGLRPEHIRLADASDSSVPAVVETVEYFGADT 301 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.136 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,129,106 Number of extensions: 45572 Number of successful extensions: 513 Number of sequences better than 1.0e-08: 133 Number of HSP's gapped: 310 Number of HSP's successfully gapped: 150 Length of query: 374 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 287 Effective length of database: 1,207,925 Effective search space: 346674475 Effective search space used: 346674475 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)