BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0204.p (235 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311552|ref|YP_003775644.1| ABC transporter ATPase [Herbasp... 405 e-114 gi|300312088|ref|YP_003776180.1| lipoprotein release ABC transpo... 195 2e-51 gi|300311361|ref|YP_003775453.1| antimicrobial peptide ABC trans... 172 2e-44 gi|300311638|ref|YP_003775730.1| metal ion ABC transporter ATPas... 147 8e-37 gi|300311701|ref|YP_003775793.1| export system ATP-binding subun... 145 3e-36 >gi|300311552|ref|YP_003775644.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 234 Score = 405 bits (1042), Expect = e-114, Method: Compositional matrix adjust. Identities = 209/233 (89%), Positives = 219/233 (93%) Query: 1 MPASAPASSAVIAAIEVLQLSKHVADVSAPAGRLTILSDIDFTVAAGTTVAIVGASGSGK 60 MP SA A +A I AIEVLQLSKHVAD SAPAGRLTIL IDFTVAAGTT+AIVGASGSGK Sbjct: 1 MPVSATAVAAAIPAIEVLQLSKHVADASAPAGRLTILDGIDFTVAAGTTLAIVGASGSGK 60 Query: 61 STLLGLLAGLDTPSEGSVRLDGEDIYALDEDGRALLRKRKLGFVFQSFQLLGHLNALENV 120 STLLGLLAGLDTPSEGSVRLDGEDIYALDEDGRALLRKRKLGFVFQSFQLLGHLNALENV Sbjct: 61 STLLGLLAGLDTPSEGSVRLDGEDIYALDEDGRALLRKRKLGFVFQSFQLLGHLNALENV 120 Query: 121 MLPLELRGDSQARSKAEQMLGRVGLGSRLKHYPKYLSGGEQQRVALARAFVTEPPLLFAD 180 MLPLELRGD++AR KA +MLGRVGLGSRLKH PKYLSGGEQQRVALARAFVTEPPLL AD Sbjct: 121 MLPLELRGDARAREKATEMLGRVGLGSRLKHSPKYLSGGEQQRVALARAFVTEPPLLLAD 180 Query: 181 EPTGSLDAATGESVIQLMFELNRERGSTLVLVTHDPGIAARCERTLTIAAGRL 233 EPTGSLDAATGE+VI+LMFELNRERGSTLVLVTHD +AARC+RT+TIAAGRL Sbjct: 181 EPTGSLDAATGEAVIELMFELNRERGSTLVLVTHDNAMAARCQRTITIAAGRL 233 >gi|300312088|ref|YP_003776180.1| lipoprotein release ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 236 Score = 195 bits (496), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 103/198 (52%), Positives = 134/198 (67%), Gaps = 2/198 (1%) Query: 34 LTILSDIDFTVAAGTTVAIVGASGSGKSTLLGLLAGLDTPSEGSVRLDGEDIYALDEDGR 93 + +L ++D V G VAIVGASGSGKSTLL LL GLDTPS G+V L G+D +L E R Sbjct: 28 VKVLGNVDIDVYHGEQVAIVGASGSGKSTLLHLLGGLDTPSSGTVSLLGKDFASLGESER 87 Query: 94 ALLRKRKLGFVFQSFQLLGHLNALENVMLPLELR--GDSQARSKAEQMLGRVGLGSRLKH 151 LR + LGFV+Q LL +AL+NV +PL +R + A+ +A +MLG+VGL R+ H Sbjct: 88 GALRNQSLGFVYQFHHLLPEFSALDNVAMPLMIRRVKRADAQEQAREMLGKVGLAQRVTH 147 Query: 152 YPKYLSGGEQQRVALARAFVTEPPLLFADEPTGSLDAATGESVIQLMFELNRERGSTLVL 211 P LSGGE+QRVALARA VT P + ADEPTG+LD +T + +LM EL+R G+ V+ Sbjct: 148 VPGELSGGERQRVALARALVTHPACVLADEPTGNLDRSTADRTFELMIELSRTLGTAFVI 207 Query: 212 VTHDPGIAARCERTLTIA 229 VTHD +A RC R L ++ Sbjct: 208 VTHDIELAGRCGRVLRLS 225 >gi|300311361|ref|YP_003775453.1| antimicrobial peptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 657 Score = 172 bits (436), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 93/209 (44%), Positives = 136/209 (65%), Gaps = 5/209 (2%) Query: 30 PAG--RLTILSDIDFTVAAGTTVAIVGASGSGKSTLLGLLAGLDTPSEGSVRLDGEDIYA 87 PAG ++T+L+D++ + AG VAIVGASGSGKSTL+ +L LD PS GS + G + Sbjct: 16 PAGDEKITVLNDVNLDIHAGELVAIVGASGSGKSTLMNILGCLDKPSAGSYLVAGRETGK 75 Query: 88 LDEDGRALLRKRKLGFVFQSFQLLGHLNALENVMLPLELRGDS--QARSKAEQMLGRVGL 145 LD D A LR+ GF+FQ + LL L+A NV +P G Q R +A ++L R+GL Sbjct: 76 LDADELAQLRREHFGFIFQRYHLLSDLDATANVEVPSVYAGLEPLQRRQRAGELLARLGL 135 Query: 146 GSRLKHYPKYLSGGEQQRVALARAFVTEPPLLFADEPTGSLDAATGESVIQLMFELNRER 205 R H P LSGG+QQRV++ARA + ++ ADEPTG+LD+ +G+ VI+++ EL+ E Sbjct: 136 AERSHHKPGQLSGGQQQRVSIARALMNGGDVILADEPTGALDSHSGQEVIKILKELHAE- 194 Query: 206 GSTLVLVTHDPGIAARCERTLTIAAGRLV 234 G T+++VTHD +A+ +R + I G ++ Sbjct: 195 GHTIIIVTHDMQVASHAQRIIEIKDGVII 223 >gi|300311638|ref|YP_003775730.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 389 Score = 147 bits (371), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 79/208 (37%), Positives = 124/208 (59%), Gaps = 4/208 (1%) Query: 31 AGRLTILSDIDFTVAAGTTVAIVGASGSGKSTLLGLLAGLDTPSEGSVRLDGEDIYALDE 90 AG + L DID +A G+ I+G SG+GKS+LL + L+ P+ G V +D D+ LDE Sbjct: 52 AGPVQALQDIDLEIAPGSIFGIIGRSGAGKSSLLRTINRLERPTSGRVEVDDVDLATLDE 111 Query: 91 DGRALLRKRKLGFVFQSFQLLGHLNALENVMLPLELRG--DSQARSKAEQMLGRVGLGSR 148 LR+R +G +FQ F LL +N+ LPL + G +Q + ++L VGL + Sbjct: 112 TQLVALRRR-IGMIFQHFNLLAAKTVFDNIALPLRVAGVPRAQITQRVHELLALVGLQDK 170 Query: 149 LKHYPKYLSGGEQQRVALARAFVTEPPLLFADEPTGSLDAATGESVIQLMFELNRERGST 208 YP+ LSGG++QRV +ARA + P +L DE T +LD T +S++QL+ ++NR+ G T Sbjct: 171 ADSYPRRLSGGQKQRVGIARALASGPEILLCDEATSALDPETTQSILQLLRDINRKLGIT 230 Query: 209 LVLVTHDPGIAAR-CERTLTIAAGRLVK 235 ++L+TH+ + +R L + GR+ + Sbjct: 231 IILITHEMSVIREIADRVLVLEQGRVAE 258 >gi|300311701|ref|YP_003775793.1| export system ATP-binding subunit [Herbaspirillum seropedicae SmR1] Length = 240 Score = 145 bits (366), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 84/195 (43%), Positives = 116/195 (59%), Gaps = 6/195 (3%) Query: 43 TVAAGTTVAIVGASGSGKSTLLGLLAGLDTPSEGSVRLDGEDIYALDEDGRALLRKRKLG 102 + A G + IVG SGSGK+T L +++G+ P G VR++G D++ L ED A R +G Sbjct: 40 SAAFGEILFIVGPSGSGKTTFLSIISGILRPDGGVVRVNGVDLWNLPEDQLADFRLNTIG 99 Query: 103 FVFQSFQLLGHLNALENVMLPLELRG--DSQARSKAEQMLGRVGLGSRLKHYPKYLSGGE 160 FVFQ + L L + ENV +PL L+ A + A L VGL +P LSGGE Sbjct: 100 FVFQDYHLFPRLTSAENVAIPLILKNVDWKSALASANMFLDVVGLKGCGDVFPLKLSGGE 159 Query: 161 QQRVALARAFVTEPPLLFADEPTGSLDAATGESVIQLMFE--LNRERGSTLVLVTHDPGI 218 QQRVA+ARA V+ PP+L DEPT SLD TG +I + E LN R +++VTHDP I Sbjct: 160 QQRVAIARAIVSSPPILILDEPTASLDGDTGRMIIAFLREKILNPRR--CILIVTHDPRI 217 Query: 219 AARCERTLTIAAGRL 233 + +R + +A G++ Sbjct: 218 SEFADRIVHMADGKV 232 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.134 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 587,134 Number of extensions: 21856 Number of successful extensions: 348 Number of sequences better than 1.0e-08: 130 Number of HSP's gapped: 235 Number of HSP's successfully gapped: 142 Length of query: 235 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 153 Effective length of database: 1,231,600 Effective search space: 188434800 Effective search space used: 188434800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)