BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0201.p
         (306 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311554|ref|YP_003775646.1| hypothetical protein Hsero_2239...   437   e-124

>gi|300311554|ref|YP_003775646.1| hypothetical protein Hsero_2239
           [Herbaspirillum seropedicae SmR1]
          Length = 522

 Score =  437 bits (1123), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 230/264 (87%), Positives = 245/264 (92%)

Query: 1   MSALHSVAEIRQVEQAALSALPPYTLMQRAGAAIAEQAQQLLCSTTASSPSVLVLAGPGN 60
           MSALH+VAEIR++EQ AL+ALPPYTLMQRAGAAIAE AQQ+LCS+TASSPSVLVLAGPGN
Sbjct: 1   MSALHTVAEIRRIEQEALAALPPYTLMQRAGAAIAELAQQMLCSSTASSPSVLVLAGPGN 60

Query: 61  NGGDALEAACLLEEAGIEVSVQLHADESRQPADARRALARAREAELEFIEGTGDVPLRAR 120
           NGGDALEAACLLEEAGIEV+VQLHADESRQP DARRALARAREAE++FIE  GD  LR +
Sbjct: 61  NGGDALEAACLLEEAGIEVTVQLHADESRQPPDARRALARAREAEIQFIEDHGDALLRQQ 120

Query: 121 SWALVIDGLFGIGLTRPPGPALRPIIEYINSLRCPVLSIDVPSGLNADTGSIVGGREGVA 180
           +WALVIDGLFGIGL RPPGP LR II+YINSLRCPVLSIDVPSGL+ADTGSIVGGR+G A
Sbjct: 121 AWALVIDGLFGIGLARPPGPRLRLIIDYINSLRCPVLSIDVPSGLDADTGSIVGGRDGAA 180

Query: 181 VQATHTLSFIGDKPGLHTCDGSDHSGQIVVDALEIDAALLPPARAFLNGPQSFATALKPR 240
           VQATHTL+FIGDKPGLHTCDGSDHSGQIVVD LEI A    P RAFLNGPQSFATALKPR
Sbjct: 181 VQATHTLTFIGDKPGLHTCDGSDHSGQIVVDTLEIAAERFLPTRAFLNGPQSFATALKPR 240

Query: 241 ANNSHKGSYGDVIVVGGARGMAGA 264
           ANNSHKGSYGDVIVVGGARGMAGA
Sbjct: 241 ANNSHKGSYGDVIVVGGARGMAGA 264


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 924,416
Number of extensions: 36158
Number of successful extensions: 139
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 221
Effective length of database: 1,217,395
Effective search space: 269044295
Effective search space used: 269044295
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)