BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0199.p
         (200 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311555|ref|YP_003775647.1| D-amino acid dehydrogenase smal...   321   2e-89
gi|300311013|ref|YP_003775105.1| glycine/D-amino acid oxidase [H...    77   7e-16

>gi|300311555|ref|YP_003775647.1| D-amino acid dehydrogenase small
           subunit [Herbaspirillum seropedicae SmR1]
          Length = 423

 Score =  321 bits (823), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 155/194 (79%), Positives = 170/194 (87%)

Query: 1   VAEEATFGDSGLLAPGAAMPLTLPGAMATFACRFQDEPRVLLAPGTDFGRRRWMRATRQA 60
           VAEEATFGDSGLLAPG AMPLTLPGA+ATFACRFQDEPRVLLA G DFGRRRWMRATR A
Sbjct: 40  VAEEATFGDSGLLAPGTAMPLTLPGALATFACRFQDEPRVLLASGADFGRRRWMRATRAA 99

Query: 61  QHHDFAGNKLRLTRLSAYGQSLTLQLQAHHNLDHENGQGVFHLFRQPAEAARMAQLEEAA 120
           Q H FA +KL L+RLSAYGQ LT QLQAH+N++HEN  GVFHLFRQ AEAAR+  L+EAA
Sbjct: 100 QQHHFAQHKLILSRLSAYGQDLTQQLQAHYNMEHENSAGVFHLFRQSAEAARLPALQEAA 159

Query: 121 GQCEFKHQALDAAGIRTLEPAFSSEAKLSGALYYPEDMAGNCVLFAKQMRNAAQELGVSF 180
            QCE+K   LDAAGIR LEPAFSSEA L+GALYYP+D+AGN VLFAKQMRNAAQ LGVSF
Sbjct: 160 SQCEYKQLTLDAAGIRALEPAFSSEAALAGALYYPDDIAGNSVLFAKQMRNAAQALGVSF 219

Query: 181 HFDSTVTSINAEFG 194
           HF+STV+SI +EFG
Sbjct: 220 HFNSTVSSIRSEFG 233


>gi|300311013|ref|YP_003775105.1| glycine/D-amino acid oxidase
           [Herbaspirillum seropedicae SmR1]
          Length = 433

 Score = 77.4 bits (189), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 92/196 (46%), Gaps = 12/196 (6%)

Query: 2   AEEATFGDSGLLAPGAAMPLTLPGA-MATFACRFQDEPRVLLAPGTDFGRRRWM-RATRQ 59
           A E +FG++G ++PG A P   PG  +      FQ+   + +     F + RWM +  R 
Sbjct: 36  ALETSFGNAGQISPGYASPWAAPGIPLKAIKWMFQEHAPLAIRLDGSFNQLRWMWQMLRN 95

Query: 60  AQHHDFAGNKLRLTRLSAYGQSLTLQLQAHHNLDHEN-GQGVFHLFRQPAE----AARMA 114
                +A NK R+ RL+ Y +     L+A   + +E   QG   LFR   +    A  +A
Sbjct: 96  CNAERYAVNKERMVRLAEYSRDCLRDLRADVGIPYEGRQQGTLQLFRSQEQLEGAAKDIA 155

Query: 115 QLEEAAGQCEFKHQALDAAGIRTLEPAFSS-EAKLSGALYYPEDMAGNCVLFAKQMRNAA 173
            L+EA     F+    D  G    EPA +    KL+G L  P D  G+C LF  ++   A
Sbjct: 156 VLKEAG--VPFELLTPDQLG--NAEPALAKVRDKLTGGLRLPNDETGDCQLFTTRLATMA 211

Query: 174 QELGVSFHFDSTVTSI 189
           +++GV F +   + ++
Sbjct: 212 EQIGVKFRYGVDIDAL 227


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.131    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 642,285
Number of extensions: 25726
Number of successful extensions: 89
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 2
Length of query: 200
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 119
Effective length of database: 1,236,335
Effective search space: 147123865
Effective search space used: 147123865
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)