BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0197.p (1343 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311556|ref|YP_003775648.1| phosphoribosylformylglycinamidi... 2702 0.0 >gi|300311556|ref|YP_003775648.1| phosphoribosylformylglycinamidine synthase [Herbaspirillum seropedicae SmR1] Length = 1341 Score = 2702 bits (7005), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1304/1343 (97%), Positives = 1324/1343 (98%), Gaps = 2/1343 (0%) Query: 1 MLILPGSNALSAFRTQRLLTQLQAVDAAITGVSGRYLHFVDAGQAQALTREDEARLNGLL 60 MLILPGSNALSAFRTQRLLTQLQAVDAAITGVSGRYLHFVDA AQALT+EDEARLNGLL Sbjct: 1 MLILPGSNALSAFRTQRLLTQLQAVDAAITGVSGRYLHFVDA--AQALTQEDEARLNGLL 58 Query: 61 TYGDPFNGSDEGDAFVVIPRFGTISPWASKATDIVRNCGMGHIHRVERGIIFRVQVKTGL 120 TYGDPFNGSD+G+ FVVIPR GTISPWASKATDIVRNCGM HIHRVERGIIFRVQVKTGL Sbjct: 59 TYGDPFNGSDDGETFVVIPRLGTISPWASKATDIVRNCGMAHIHRVERGIIFRVQVKTGL 118 Query: 121 LGGTKKLNEASIPAVAALLHDRMTETVLRDPQDAAGLFSELQAKPLESVDVIGGGRAALE 180 LGG KKLNEAS+P VAALLHDRMTETVLRDPQ A+ LFSELQAKPLESVDV+GG RAALE Sbjct: 119 LGGAKKLNEASLPGVAALLHDRMTETVLRDPQQASALFSELQAKPLESVDVLGGSRAALE 178 Query: 181 RANTELGLALSDDEIDYLVDAFTKAQRNPTDVELMMFAQANSEHCRHKIFNADWTIDGEK 240 RANTELGLALSDDEIDYLV+AFTKAQRNPTDVELMMFAQANSEHCRHKIFNADWTIDG+K Sbjct: 179 RANTELGLALSDDEIDYLVEAFTKAQRNPTDVELMMFAQANSEHCRHKIFNADWTIDGQK 238 Query: 241 QDKSLFGMIKNTHQLAPKGTVVAYSDNSSIIEGATVSRFYQRGATKGNVYEASDELTHIL 300 QDKSLFGMIKNTHQLAPKGTVVAYSDNSSIIEGATVSRFYQRGA KGNVYEAS+ELTHIL Sbjct: 239 QDKSLFGMIKNTHQLAPKGTVVAYSDNSSIIEGATVSRFYQRGAIKGNVYEASEELTHIL 298 Query: 301 MKVETHNHPTAISPFPGASTGAGGEIRDEGATGRGSKPKAGLTGFTVSNLMVTHAVQPWE 360 MKVETHNHPTAISPFPGASTGAGGEIRDEGATGRGSKPKAGLTGFTVSNLMVTHAVQPWE Sbjct: 299 MKVETHNHPTAISPFPGASTGAGGEIRDEGATGRGSKPKAGLTGFTVSNLMVTHAVQPWE 358 Query: 361 NARDVAQPVDQRDEHAQGGIYGKPERIASPLQIMIDGPLGGAAFNNEFGRPNLGGYFRTY 420 NARDVAQPV +RD HAQGGIYGKPERIASPLQIMIDGPLGGAAFNNEFGRPNLGGYFRTY Sbjct: 359 NARDVAQPVAERDAHAQGGIYGKPERIASPLQIMIDGPLGGAAFNNEFGRPNLGGYFRTY 418 Query: 421 EQNVGGQVMGYHKPIMIAGGMGNISAKHTKKNDLPVGSLLIQLGGPGMRIGMGGGAASSM 480 EQNVGGQVMGYHKPIMIAGGMGNISAKHTKKNDLPVGSLLIQLGGPGMRIGMGGGAASSM Sbjct: 419 EQNVGGQVMGYHKPIMIAGGMGNISAKHTKKNDLPVGSLLIQLGGPGMRIGMGGGAASSM 478 Query: 481 ATGVNTADLDFDSVQRGNPEMERRAQEVINACWALGDDNPIQSIHDVGAGGLSNAFPEIT 540 ATGVN ADLDFDSVQRGNPEMERRAQEVINACWALGDDNPIQSIHDVGAGGLSNAFPEIT Sbjct: 479 ATGVNAADLDFDSVQRGNPEMERRAQEVINACWALGDDNPIQSIHDVGAGGLSNAFPEIT 538 Query: 541 NDAKRGAIFDLRKVPLEESGLAPREIWSNESQERYVLAILPEHLDLFKYLCERERAPFAV 600 NDAKRGAIFDLRKVPLEESGLAPREIWSNESQERYVLAILPEHL+LFKYLCERERAPFAV Sbjct: 539 NDAKRGAIFDLRKVPLEESGLAPREIWSNESQERYVLAILPEHLELFKYLCERERAPFAV 598 Query: 601 VGTATEERQLKVIDPEHNNNPVDMPMDVLLGKPPKMHRDVQHVEKQLPPVDLTGMDLVDV 660 VGTATEERQLKVIDPEHNN+PVDMPMDVLLGKPPKMHRDV HVEKQLPPVDLTGMDLV+V Sbjct: 599 VGTATEERQLKVIDPEHNNSPVDMPMDVLLGKPPKMHRDVTHVEKQLPPVDLTGMDLVEV 658 Query: 661 AQRVLRLPAVADKSFLITIGDRSVGAMTVRDQMVGPWQVPVADVAVTAMGLEGYLGEAMA 720 AQRVLRLPAVADKSFLITIGDRSVGAMTVRDQMVGPWQVPVADVAVTAMGLEGY GEAMA Sbjct: 659 AQRVLRLPAVADKSFLITIGDRSVGAMTVRDQMVGPWQVPVADVAVTAMGLEGYRGEAMA 718 Query: 721 MGERTPLAVIDAPASGRMAVGEAITNIAAAPIAEIGDIKLSANWMAACGQPGQDAALFDT 780 MGERTPLAVIDAPASGRMAVGEAITNIAAAPIAEIGDIKLSANWMAACGQPGQDAALFDT Sbjct: 719 MGERTPLAVIDAPASGRMAVGEAITNIAAAPIAEIGDIKLSANWMAACGQPGQDAALFDT 778 Query: 781 VKAVGMELCPALGISIPVGKDSLSMRSTWSDEAGAKSVTSPVSLIVSGFAPVTDVRRVLT 840 VKAVGMELCPALG+SIPVGKDSLSMRSTWSDE GAKSVTSPVSLIVSGFAPVTDVRRVLT Sbjct: 779 VKAVGMELCPALGVSIPVGKDSLSMRSTWSDEEGAKSVTSPVSLIVSGFAPVTDVRRVLT 838 Query: 841 PQLRKDKGETVLILIDLGRGKNRMGASALTQVMQQIGNETPDVDSAEDLKAFFNAIQQLN 900 PQLRKDKGETVLILIDLGRGKNR+GASALTQVMQQIGNETPDVDSA+DLKAFFNAIQQLN Sbjct: 839 PQLRKDKGETVLILIDLGRGKNRIGASALTQVMQQIGNETPDVDSADDLKAFFNAIQQLN 898 Query: 901 TEDRLLAYHDRSDGGLYATLAEMAFAGHTGISVNLDILTMEAEHAADWGDSKNWTTQVAE 960 TEDRLLAYHDRSDGGLYATLAEMAFAGHTGISVNLDILTME EHAADWGDSKNWTTQVAE Sbjct: 899 TEDRLLAYHDRSDGGLYATLAEMAFAGHTGISVNLDILTMEGEHAADWGDSKNWTTQVAE 958 Query: 961 RRNELTLRALFSEELGAVIQVPAEQKSDVMNVLRSYNLGACSHIIGKPNDRDVIEFMRDA 1020 RRNELTLRALFSEELGAVIQVPAEQKSDVMNVLRSYNLGACSHIIGKPNDRDVIEFMRDA Sbjct: 959 RRNELTLRALFSEELGAVIQVPAEQKSDVMNVLRSYNLGACSHIIGKPNDRDVIEFMRDA 1018 Query: 1021 KNIYSQPRAELHRVWSETSWRIARLRDNPACADAEYERLLDAADPGMTPKLTFDPQEDIA 1080 KNIYSQPRAELHRVWSETSWRIARLRDNPACADAEY+RLLDA DPGMTPKL+FDPQEDIA Sbjct: 1019 KNIYSQPRAELHRVWSETSWRIARLRDNPACADAEYDRLLDATDPGMTPKLSFDPQEDIA 1078 Query: 1081 APYLSLGAAARPKVAILREQGVNSHIETAYAMHKAGFTAVDVHMSDLIANRAKLDDFKGF 1140 APYLSLGAAARPKVAILREQGVNSHIETAYAMHKAGFTAVDVHMSDLIANRAKLDDFKGF Sbjct: 1079 APYLSLGAAARPKVAILREQGVNSHIETAYAMHKAGFTAVDVHMSDLIANRAKLDDFKGF 1138 Query: 1141 IAVGGFSYGDVLGAGEGWAKTILFNAQLAEQFSRFFQRQDTFSLGICNGCQMMSNLKSMI 1200 IAVGGFSYGDVLGAGEGWAKTILFNAQLAEQFSRFFQRQDTFSLGICNGCQMMSNLKSMI Sbjct: 1139 IAVGGFSYGDVLGAGEGWAKTILFNAQLAEQFSRFFQRQDTFSLGICNGCQMMSNLKSMI 1198 Query: 1201 PGAEAWPKFTRNKSEQFEARFVMVEVADSPSIFMQGMAGTQAPIATAHGEGFADFSQTGD 1260 PGAEAWPKFTRNKSEQFEARFVMVEVADSPSIFMQGMAGTQAPIATAHGEGFADFSQTGD Sbjct: 1199 PGAEAWPKFTRNKSEQFEARFVMVEVADSPSIFMQGMAGTQAPIATAHGEGFADFSQTGD 1258 Query: 1261 IDKALIAMRYVDHRGAATEAYPFNPNGSPQGITSVTTPDGRFTVLMPHAERVFRTVTQSW 1320 IDKA++AMRYVDHRGAATEAYPFNPNGSPQGITSVTTPDGRFTVLMPHAERVFRTVTQSW Sbjct: 1259 IDKAIVAMRYVDHRGAATEAYPFNPNGSPQGITSVTTPDGRFTVLMPHAERVFRTVTQSW 1318 Query: 1321 HPESWGEDSPWMRMFRNARKWVG 1343 HPESWGEDSPWMRMFRNARKWVG Sbjct: 1319 HPESWGEDSPWMRMFRNARKWVG 1341 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.134 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 4,419,494 Number of extensions: 201427 Number of successful extensions: 565 Number of sequences better than 1.0e-08: 1 Number of HSP's gapped: 562 Number of HSP's successfully gapped: 1 Length of query: 1343 Length of database: 1,619,870 Length adjustment: 97 Effective length of query: 1246 Effective length of database: 1,160,575 Effective search space: 1446076450 Effective search space used: 1446076450 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 137 (57.4 bits)