BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0186.p (252 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311565|ref|YP_003775657.1| branched-chain amino acid ABC t... 429 e-121 gi|300314073|ref|YP_003778165.1| amino acid ABC transporter ATPa... 199 2e-52 gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPa... 169 2e-43 gi|300312952|ref|YP_003777044.1| amino acid ABC transporter ATPa... 162 3e-41 gi|300313284|ref|YP_003777376.1| branched-chain amino acid ABC t... 155 4e-39 >gi|300311565|ref|YP_003775657.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 252 Score = 429 bits (1103), Expect = e-121, Method: Compositional matrix adjust. Identities = 215/252 (85%), Positives = 231/252 (91%) Query: 1 MTASLPLVLQDVHKAFDRSEILRGVDLQLQPGERCALIGPNGAGKSSLFHVVSGRYRADA 60 M A++ L LQ +HKAFD S ILRGVDL+L+ GERCALIGPNGAGKSSLFH+VSGRYRADA Sbjct: 1 MIAAVALSLQGLHKAFDGSPILRGVDLELRAGERCALIGPNGAGKSSLFHLVSGRYRADA 60 Query: 61 GRVLLHGRDITREPPQQIHRLGLARSFQITSLFPRLSAFENVRCALLWTLGYRYAFWRRI 120 GR+ LHG DITR+ PQQI+RLGLARSFQITSLFPRLSAFENVRCALLWTLGYRYAFWRR+ Sbjct: 61 GRITLHGVDITRQSPQQINRLGLARSFQITSLFPRLSAFENVRCALLWTLGYRYAFWRRM 120 Query: 121 GQLRDASERALSVLDKVGLAKRAEVAAGELSYAEQRALELAVTIAADASVILLDEPTAGM 180 G +AS RAL+VL +VGLA RA+VAAGELSYAEQRALELAVTIAADASVILLDEPTAGM Sbjct: 121 GGSHEASARALTVLQQVGLAARADVAAGELSYAEQRALELAVTIAADASVILLDEPTAGM 180 Query: 181 SRAESAAMVALIREVTVGKTLLMVEHDMQVVFGLADRIAVMDNGRVIACASAERIRANPD 240 SRAESAAMVALIREVT+GKTLLMVEHDMQVVF LADRIAVMDNGRVIAC +A RIRAN D Sbjct: 181 SRAESAAMVALIREVTMGKTLLMVEHDMQVVFDLADRIAVMDNGRVIACDTAPRIRANED 240 Query: 241 VQALYLDRRPHG 252 VQALYLDRR HG Sbjct: 241 VQALYLDRRRHG 252 >gi|300314073|ref|YP_003778165.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 256 Score = 199 bits (505), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 98/240 (40%), Positives = 151/240 (62%) Query: 7 LVLQDVHKAFDRSEILRGVDLQLQPGERCALIGPNGAGKSSLFHVVSGRYRADAGRVLLH 66 L +++ K F + V+LQ++ G ALIGPNGAGK++ F++++ +G++L + Sbjct: 6 LETRNLTKEFKGFTAVSAVNLQIERGHIHALIGPNGAGKTTCFNLLTKFLVPTSGQILFN 65 Query: 67 GRDITREPPQQIHRLGLARSFQITSLFPRLSAFENVRCALLWTLGYRYAFWRRIGQLRDA 126 GRDIT + P QI R G+ RSFQI+++FP +S ENVR L LG + FW+ L+ Sbjct: 66 GRDITMDAPAQIARQGIIRSFQISAVFPHMSVLENVRIGLQRKLGTSFHFWKNGESLKQL 125 Query: 127 SERALSVLDKVGLAKRAEVAAGELSYAEQRALELAVTIAADASVILLDEPTAGMSRAESA 186 ERA+ +L++V L A +L Y +RALE+A T+A + ++LLDEPT GM + Sbjct: 126 DERAMQLLEEVDLTSFAHTTTVDLPYGRKRALEIATTLAMEPELMLLDEPTQGMGHEDVD 185 Query: 187 AMVALIREVTVGKTLLMVEHDMQVVFGLADRIAVMDNGRVIACASAERIRANPDVQALYL 246 + ALI++V+ G+T+LMVEH+M V+ G+ DRI+V+ G ++A S E + NP V Y+ Sbjct: 186 RVTALIKKVSAGRTILMVEHNMSVIAGICDRISVLQRGALLAEGSYEEVSRNPQVMEAYM 245 >gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 169 bits (429), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 95/248 (38%), Positives = 146/248 (58%), Gaps = 6/248 (2%) Query: 7 LVLQDVHKAFDRSEILRGVDLQLQPGERCALIGPNGAGKSSLFHVVSGRYRADAGRVLLH 66 L L D+ K F ++L+GV+ ++ GE LIGPNGAGK+++F++++G RA +G + + Sbjct: 3 LQLNDISKNFGGLQVLQGVNFNVRQGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIRFN 62 Query: 67 GRDITREPPQQIHRLGLARSFQITSLFPRLSAFENVRCALLWTLGYRYA-FWRRIGQLRD 125 DI P +I G+AR+FQ +F ++ ENV + L Y A +G R+ Sbjct: 63 DDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHDHLNYGVASMLLNLGGFRN 122 Query: 126 AS----ERALSVLDKVGLAKRAEVAAGELSYAEQRALELAVTIAADASVILLDEPTAGMS 181 A ERAL +L V L +A + A LSY EQR LE A +A ++LLDEP AGM+ Sbjct: 123 AEKEARERALELLSWVRLDHKAHMLADSLSYGEQRKLEFARALATKPKLLLLDEPVAGMN 182 Query: 182 RAESAAMVALIREVTV-GKTLLMVEHDMQVVFGLADRIAVMDNGRVIACASAERIRANPD 240 AE +++ I + G T+ M+EHDM+ V GL +RIAV++ G++IA + ++I+ N + Sbjct: 183 PAEKTELMSEIVNIKQRGFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQIKNNQE 242 Query: 241 VQALYLDR 248 V YL + Sbjct: 243 VIEAYLGK 250 >gi|300312952|ref|YP_003777044.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 162 bits (409), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 99/244 (40%), Positives = 145/244 (59%) Query: 3 ASLPLVLQDVHKAFDRSEILRGVDLQLQPGERCALIGPNGAGKSSLFHVVSGRYRADAGR 62 A+L LV++ + K + R VDL++ G+ A+IGPNGAGK++L ++SG ADAG Sbjct: 6 AALALVVKGLKKNYGGLAATRDVDLEIAAGQVHAIIGPNGAGKTTLLSLLSGALAADAGE 65 Query: 63 VLLHGRDITREPPQQIHRLGLARSFQITSLFPRLSAFENVRCALLWTLGYRYAFWRRIGQ 122 + L G+ + Q GL RSFQITS+F LS EN++ A+ Y F+ Sbjct: 66 IHLFGQPMHGHAEQARVAAGLVRSFQITSVFDELSVLENLQVAVQRGQHRSYGFFHASAG 125 Query: 123 LRDASERALSVLDKVGLAKRAEVAAGELSYAEQRALELAVTIAADASVILLDEPTAGMSR 182 R A E A++V +VGL K + +LS+ +R L++ + IA V+L+DEP AGM Sbjct: 126 DRAAREAAMTVARRVGLEKVVHQLSSQLSHGARRRLDVGLAIACSPRVLLMDEPMAGMGH 185 Query: 183 AESAAMVALIREVTVGKTLLMVEHDMQVVFGLADRIAVMDNGRVIACASAERIRANPDVQ 242 ES M+ALI+ + T+++VEHDM+ VF LADR+ V+ G V+A S + IRAN +V+ Sbjct: 186 EESGDMIALIQSLKEELTVVLVEHDMEAVFALADRMTVLVQGAVLATGSVDEIRANAEVK 245 Query: 243 ALYL 246 YL Sbjct: 246 LAYL 249 >gi|300313284|ref|YP_003777376.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 155 bits (391), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 80/227 (35%), Positives = 132/227 (58%) Query: 25 VDLQLQPGERCALIGPNGAGKSSLFHVVSGRYRADAGRVLLHGRDITREPPQQIHRLGLA 84 + L PG R ALIGPNGAGK++ ++++G + +GRV G DIT P + G+ Sbjct: 30 ISLTFAPGARHALIGPNGAGKTTFINLLTGGFAPSSGRVWFGGEDITALPQHARVKRGMT 89 Query: 85 RSFQITSLFPRLSAFENVRCALLWTLGYRYAFWRRIGQLRDASERALSVLDKVGLAKRAE 144 R+FQI +LF L+ E+V A+ G +Y +++ + + + A+++L + LA+ A Sbjct: 90 RTFQINTLFAGLTVLESVVLAIQERRGLQYKWYQTVASQTEVVDEAMALLASLKLAQEAN 149 Query: 145 VAAGELSYAEQRALELAVTIAADASVILLDEPTAGMSRAESAAMVALIREVTVGKTLLMV 204 L+Y +QR +E+A+ +A V+LLDEP AG+ AES + +I ++ T++ + Sbjct: 150 SLTRNLAYGKQRLVEIALALATQPKVLLLDEPAAGIPSAESRELFEVIAQLPREVTIVFI 209 Query: 205 EHDMQVVFGLADRIAVMDNGRVIACASAERIRANPDVQALYLDRRPH 251 EHDM +VF A+RI V+ G+V+ + I A+P V+ +YL H Sbjct: 210 EHDMGLVFRFAERITVLVGGKVLVEGTPAEIAADPRVKEVYLGEAEH 256 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.137 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 776,686 Number of extensions: 31969 Number of successful extensions: 604 Number of sequences better than 1.0e-08: 123 Number of HSP's gapped: 363 Number of HSP's successfully gapped: 136 Length of query: 252 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 169 Effective length of database: 1,226,865 Effective search space: 207340185 Effective search space used: 207340185 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 129 (54.3 bits)