BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0185.p (238 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311566|ref|YP_003775658.1| branched-chain amino acid ABC t... 330 7e-92 gi|300313935|ref|YP_003778027.1| branched-chain amino acid ABC t... 198 3e-52 gi|300311769|ref|YP_003775861.1| branched-chain amino acid ABC t... 187 7e-49 gi|300314072|ref|YP_003778164.1| amino acid ABC transporter ATPa... 180 1e-46 gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC t... 179 2e-46 >gi|300311566|ref|YP_003775658.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 238 Score = 330 bits (846), Expect = 7e-92, Method: Compositional matrix adjust. Identities = 169/238 (71%), Positives = 196/238 (82%) Query: 1 MDKSSALLRIAGLQAWYGQSHVLHGVSLEVARGEIVSILGRNGAGRSTLLKAVMGQVRST 60 MDK+S LL + GLQA YG S VLHGV L V RGEIVSILGRNGAGRSTLLKA+MG + S Sbjct: 1 MDKTSLLLSVTGLQAGYGHSRVLHGVDLTVQRGEIVSILGRNGAGRSTLLKALMGLLPSR 60 Query: 61 GEIDFEDRSLAGLATYAIAQRGVGYVPESRDVFPALTVQQNLLLGRKSGPVPDDGWREEE 120 G+ FE R ++GL T+AIA+ G+GYVPESR+VFP L+V QNLLLGRK GP P GW E++ Sbjct: 61 GDCRFEGRDISGLPTHAIARLGMGYVPESREVFPTLSVAQNLLLGRKPGPQPGRGWCEDD 120 Query: 121 VLTLFPSLERRYKVAAGALSGGEQQMLALGRALMGNPRLLLIDEPTEGLSPQMVGQVAHY 180 + LFP+L +R +VAA ALSGGEQQMLALGRAL+GNP LLL+DEPTEGL+PQMV QVA Sbjct: 121 IHALFPALYKRRQVAAAALSGGEQQMLALGRALLGNPSLLLVDEPTEGLAPQMVEQVARA 180 Query: 181 LELLRQRQVAVLLIEQKQALALELSQRVYVMGRGEMVFHGTPAQLAADQALQQEWLAL 238 L+ LR R VAVLL+EQKQALALELSQRVYVMGRGEMVF GTP L+A + +Q+EWLAL Sbjct: 181 LQELRTRGVAVLLVEQKQALALELSQRVYVMGRGEMVFEGTPTGLSAQETVQREWLAL 238 >gi|300313935|ref|YP_003778027.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 234 Score = 198 bits (503), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 95/233 (40%), Positives = 157/233 (67%), Gaps = 5/233 (2%) Query: 7 LLRIAGLQAWYGQSHVLHGVSLEVARGEIVSILGRNGAGRSTLLKAVMGQVRST-GEIDF 65 +L++ + +YG+SH+L GVSL+V GE+V++LGRNGAG++T LK+++G V G + F Sbjct: 2 ILQVEDVHGYYGKSHILQGVSLQVDAGEVVTLLGRNGAGKTTTLKSIVGVVPPVQGRVLF 61 Query: 66 EDRSLAGLATYAIAQRGVGYVPESRDVFPALTVQQNLLLGRKSGPVPDDGWREEEVLTLF 125 E + ++GL +Y IA RGV VPE R +F LTV++NL + + + W EE+ +F Sbjct: 62 EGQLISGLPSYKIAARGVCLVPEHRGIFKLLTVEENLTMAARK----ESAWGLEEIYAIF 117 Query: 126 PSLERRYKVAAGALSGGEQQMLALGRALMGNPRLLLIDEPTEGLSPQMVGQVAHYLELLR 185 P L+ R K G LSGGEQQMLA+ RALM +PR+L++DEP EGL+P +V ++ + ++ Sbjct: 118 PRLKERRKNGGGQLSGGEQQMLAIARALMTHPRVLMLDEPVEGLAPVIVDEIVAQIRQIK 177 Query: 186 QRQVAVLLIEQKQALALELSQRVYVMGRGEMVFHGTPAQLAADQALQQEWLAL 238 ++++L+EQ + +L+ R Y++ +G +V+HG+ A+ AD+ ++ +L + Sbjct: 178 ATGMSIILVEQNLEVCTQLADRHYIVEQGRIVYHGSNAEFLADEGVKDRYLGV 230 >gi|300311769|ref|YP_003775861.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 233 Score = 187 bits (475), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 100/227 (44%), Positives = 145/227 (63%), Gaps = 1/227 (0%) Query: 4 SSALLRIAGLQAWYGQSHVLHGVSLEVARGEIVSILGRNGAGRSTLLKAVMGQV-RSTGE 62 S LL++ GL WY +H+L G+ LE+ GE+V+++GRNGAG+ST LKA+MG + R G+ Sbjct: 2 SQCLLQVQGLHGWYADAHILFGLDLEIRAGEVVALMGRNGAGKSTTLKALMGLLERRQGQ 61 Query: 63 IDFEDRSLAGLATYAIAQRGVGYVPESRDVFPALTVQQNLLLGRKSGPVPDDGWREEEVL 122 I R + LA + A+ G+GYVPE R +F L+V +NL GR+ W + + Sbjct: 62 IRLAGRDIGKLAPHQRARLGLGYVPEDRRIFTELSVLENLETGRQPPRPGAPHWTPQALF 121 Query: 123 TLFPSLERRYKVAAGALSGGEQQMLALGRALMGNPRLLLIDEPTEGLSPQMVGQVAHYLE 182 LFP+L + G +SGGEQQML + R LMGNPRLLL+DEP+EG++P +V Q+A ++ Sbjct: 122 ELFPNLGAMPQRLGGRMSGGEQQMLTIARTLMGNPRLLLLDEPSEGVAPVIVEQMAAMIQ 181 Query: 183 LLRQRQVAVLLIEQKQALALELSQRVYVMGRGEMVFHGTPAQLAADQ 229 L++ +A+LL EQ A + R Y++ +G +V GTPA L A Q Sbjct: 182 ELKRSGIAILLCEQNLHFASLVCDRGYLLDQGRIVAAGTPASLQAHQ 228 >gi|300314072|ref|YP_003778164.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 180 bits (456), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 96/233 (41%), Positives = 143/233 (61%), Gaps = 2/233 (0%) Query: 7 LLRIAGLQAWYGQSHVLHGVSLEVARGEIVSILGRNGAGRSTLLKAVMGQVRS-TGEIDF 65 +L+I+ LQ+WYG+SH+LH V+L V +GE+V++LGRNGAGR+T L+++MG V + G I Sbjct: 11 VLQISDLQSWYGESHILHNVNLNVHQGEVVTLLGRNGAGRTTTLRSIMGLVGTRKGSIKI 70 Query: 66 EDRSLAGLATYAIAQRGVGYVPESRDVFPALTVQQNLLLGRKSGPVPDDGWREEEVLTLF 125 + LAT+ IA GVGY PE R +F +L+ ++NL+L D G +E+ +F Sbjct: 71 NGQETINLATHKIAHHGVGYCPEERGIFSSLSAEENLMLPPFVSKT-DKGMSIDEIYEMF 129 Query: 126 PSLERRYKVAAGALSGGEQQMLALGRALMGNPRLLLIDEPTEGLSPQMVGQVAHYLELLR 185 P+L+ R LSGGEQQMLA+ R L RLLL+DE +EGL+P +V +A + L+ Sbjct: 130 PNLKERRNSQGTRLSGGEQQMLAVARILRTGARLLLLDEISEGLAPVIVQALARMITTLK 189 Query: 186 QRQVAVLLIEQKQALALELSQRVYVMGRGEMVFHGTPAQLAADQALQQEWLAL 238 + ++++EQ A L+ R YVM G++V +QL A E L + Sbjct: 190 AKGYTIVMVEQNFRFAAPLADRFYVMEHGQIVESFASSQLEAKMQTLNELLGV 242 >gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 235 Score = 179 bits (453), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 101/233 (43%), Positives = 144/233 (61%), Gaps = 5/233 (2%) Query: 7 LLRIAGLQAWYGQSHVLHGVSLEVARGEIVSILGRNGAGRSTLLKAVMGQVR-STGEIDF 65 +L+ + YG LHGVSL V +GEIV+++G NGAG++TLL + G+ R S+G + F Sbjct: 2 MLQFDKVHTHYGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGRPRASSGRVIF 61 Query: 66 EDRSLAGLATYAIAQRGVGYVPESRDVFPALTVQQNLLLGR--KSGPVPDDGWREEEVLT 123 E + + L T+ I +RG+ PE R VFP+LTV +NL +G S + G E V Sbjct: 62 EGQDITQLQTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASNEAIEQGI--EYVFG 119 Query: 124 LFPSLERRYKVAAGALSGGEQQMLALGRALMGNPRLLLIDEPTEGLSPQMVGQVAHYLEL 183 LFP L+ R AG +SGGEQQMLA+GRALM PRLLL+DEPT GL+P ++ Q+ + Sbjct: 120 LFPRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFDIIRT 179 Query: 184 LRQRQVAVLLIEQKQALALELSQRVYVMGRGEMVFHGTPAQLAADQALQQEWL 236 +R+ V V L+EQ AL ++ R YV+ G +V T A L A+ +++ +L Sbjct: 180 IRESGVTVFLVEQNANKALGVADRGYVLENGHVVMSDTGANLLANSDVRKAYL 232 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.135 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 724,242 Number of extensions: 31430 Number of successful extensions: 500 Number of sequences better than 1.0e-08: 124 Number of HSP's gapped: 309 Number of HSP's successfully gapped: 139 Length of query: 238 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 156 Effective length of database: 1,231,600 Effective search space: 192129600 Effective search space used: 192129600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)