BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0178.p (232 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311570|ref|YP_003775662.1| GntR family transcription regul... 434 e-123 gi|300312446|ref|YP_003776538.1| GntR family transcription regul... 117 1e-27 gi|300313520|ref|YP_003777612.1| transcription regulator protein... 112 3e-26 gi|300313885|ref|YP_003777977.1| GntR family transcription regul... 97 1e-21 gi|300312626|ref|YP_003776718.1| GntR family transcription regul... 89 3e-19 >gi|300311570|ref|YP_003775662.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 258 Score = 434 bits (1117), Expect = e-123, Method: Compositional matrix adjust. Identities = 212/232 (91%), Positives = 219/232 (94%) Query: 1 VRPERFAERVYETLFHAIVEGRIAVGSKLPSENDLATLFEVSRPVVRQALDRLREDQLVE 60 VRPERFAERVYETLFHAIVEGRI VGSKLPSENDLATLFEVSRPVVRQALDRLREDQLVE Sbjct: 27 VRPERFAERVYETLFHAIVEGRITVGSKLPSENDLATLFEVSRPVVRQALDRLREDQLVE 86 Query: 61 SQRGSGTYVKEKAGLAPARPDGEPETRIGHIMNGLELRLVLEPECAYMAALRRNKQDLEK 120 S RGSGTYVKEK GLAPA+P EPETRIGHIMNGLELRLV+EPECA MAALRRN+QDL++ Sbjct: 87 SLRGSGTYVKEKPGLAPAQPGAEPETRIGHIMNGLELRLVIEPECAAMAALRRNRQDLDR 146 Query: 121 MDALLLGFEEANRVGGIAHHYDFGFHEAIAQATGNQRFVQVMKTLEYDVSHAVNMLRHLM 180 M+ LL GFE ANRVGGIAHHYDFGFHEAIA ATGN RFVQVMKTLEYDVSHAVNMLRHLM Sbjct: 147 MERLLEGFEAANRVGGIAHHYDFGFHEAIATATGNLRFVQVMKTLEYDVSHAVNMLRHLM 206 Query: 181 QIPPWKRSQDAMDEHRQIFELIRLQDAEGARRAMRGHIENARTRMFNSRPGL 232 I PWKRSQDAMDEHRQIFELIR+QDAEGARRAMRGHIENARTRMFNSRPGL Sbjct: 207 HIAPWKRSQDAMDEHRQIFELIRVQDAEGARRAMRGHIENARTRMFNSRPGL 258 >gi|300312446|ref|YP_003776538.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 255 Score = 117 bits (292), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 83/228 (36%), Positives = 119/228 (52%), Gaps = 7/228 (3%) Query: 2 RPERFAERVYETLFHAIVEGRIAVGSKLPSENDLATLFEVSRPVVRQALDRLREDQLVES 61 +P+ ++ V L I G + G KLP+E+++ VSR VVR+A+ RL+ LVE+ Sbjct: 16 KPQSLSQEVVAALTAMISNGSLTPGDKLPTESEIMQTQGVSRTVVREAISRLQAAGLVET 75 Query: 62 QRGSGTYVKEKAGLAPARPDGEPETRIGHIMNGLELRLVLEPECAYMAALRRNKQDLEKM 121 + G GT+V E D T + ++ LELR+ LE E A +AA RR ++ L+++ Sbjct: 76 RHGIGTFVLEAKKGGNINIDPATITTMRDLLALLELRISLETETAGLAAARRTEEQLQEI 135 Query: 122 DALLLGFEEANRVGGIAHHYDFGFHEAIAQATGNQRFVQVMKTLEYDV--SHAVNM--LR 177 L F + GG DF FH AIA ATGN+ F++++ L V +N L Sbjct: 136 REALDLFRANQQGGGDTVGPDFRFHFAIANATGNRYFIEIISHLGMGVIPRKRINTAELA 195 Query: 178 HLMQIPPWKRSQDAMDEHRQIFELIRLQDAEGARRAMRGHIENARTRM 225 H Q R Q EH I+E I DAE AR AMR H+ N+R R+ Sbjct: 196 HDQQASYLDRVQ---REHEDIYEAIARGDAEAARAAMRNHLTNSRERL 240 >gi|300313520|ref|YP_003777612.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 233 Score = 112 bits (280), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 78/220 (35%), Positives = 114/220 (51%), Gaps = 1/220 (0%) Query: 6 FAERVYETLFHAIVEGRIAVGSKLPSENDLATLFEVSRPVVRQALDRLREDQLVESQRGS 65 ++ V L I G GSKLP+E LA F VSR VVR+A+ RL+ + +VE ++GS Sbjct: 10 LSDTVARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHEGVVEPRQGS 69 Query: 66 GTYVKEKAGLAPARPDGEPETRIGHIMNGLELRLVLEPECAYMAALRRNKQDLEKMDALL 125 G +V E+AG+ P R D + ++ +ELR +E E A AA RR+ +DL+ ++A L Sbjct: 70 GVFVTEQAGIKPLRIDYTEVSSPEAVLQIVELRRAIEAEVAAQAAKRRSAEDLQAIEAAL 129 Query: 126 LGFEEANRVGGIAHHYDFGFHEAIAQATGNQRFVQVMKTLEYDVSHAVNMLRHLMQIPPW 185 GG D FH A+AQAT N F++ ++ L + A + R + Sbjct: 130 AQIGVDVAAGGDGVAADVAFHRALAQATRNPYFIKTLEFLSQYLEAATAVTRG-NEARYE 188 Query: 186 KRSQDAMDEHRQIFELIRLQDAEGARRAMRGHIENARTRM 225 S+ +EH I E IR D AR A + H+ NA R+ Sbjct: 189 DFSRQVREEHEAIVEAIRAGDEMAARNAAQTHMFNAARRL 228 >gi|300313885|ref|YP_003777977.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 240 Score = 97.1 bits (240), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 70/221 (31%), Positives = 106/221 (47%), Gaps = 4/221 (1%) Query: 7 AERVYETLFHAIVEGRIAVGSKLPSENDLATLFEVSRPVVRQALDRLREDQLVESQRGSG 66 +E + + AI+ G + KLP+E +LA +E SR VR+AL RLR + +V S+RGSG Sbjct: 20 SEHICRQIIAAILRGELGENRKLPTEVELAQRYEASRTTVREALSRLRSEGIVVSRRGSG 79 Query: 67 TYVKEKAGLAPARPDGEPE-TRIGHIMNGLELRLVLEPECAYMAALRRNKQDLEKMDALL 125 YV+ L+ G P+ I + R +E A +AA R +D++ M L Sbjct: 80 NYVQRLPTLS---SQGSPQIASIHDVERYYAFRECVEVGAAGIAATARQDEDVQAMRIAL 136 Query: 126 LGFEEANRVGGIAHHYDFGFHEAIAQATGNQRFVQVMKTLEYDVSHAVNMLRHLMQIPPW 185 + A G D H AIA+AT N F+ ++ + + + ++L Sbjct: 137 QALQRAQLEGQTGVDEDLALHMAIARATRNPFFISTIEHALGPIRQCMELAQNLGSPQDG 196 Query: 186 KRSQDAMDEHRQIFELIRLQDAEGARRAMRGHIENARTRMF 226 +R Q DEH+ I + I A AMR HI +AR R+F Sbjct: 197 ERIQTIDDEHQAIIQAIAEGSPARAEAAMRAHIGHARLRIF 237 >gi|300312626|ref|YP_003776718.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 256 Score = 89.4 bits (220), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 83/233 (35%), Positives = 117/233 (50%), Gaps = 23/233 (9%) Query: 1 VRPERFAERVYETLFHAIVEGRIAVGSKLPSENDLATLFEVSRPVVRQALDRLREDQLVE 60 + P+R ++ + L IVEG AVGS+LPSE DLA VSRP +R+AL L + +E Sbjct: 6 IEPQRLYRQISDQLRKLIVEGEFAVGSRLPSERDLALQLGVSRPSLREALIALEVEGHIE 65 Query: 61 SQRGSGTYVKEKAGLAPARPDGEPETRI--GHIMNGLEL---RLVLEPECAYMAALRRNK 115 + GSG YV P + E RI LEL R ++E E AY AA +K Sbjct: 66 VRMGSGIYVC---------PPVQRERRIDLSSEEGPLELIRAREMIEGEVAYAAAQHGSK 116 Query: 116 QDL---EKMDALLLGFEEANRVGGI-AHHYDFGFHEAIAQATGNQRFVQVMKTLEYDVSH 171 Q + E+ AL++ +N GI D FH +A+ATGN V ++ L +D Sbjct: 117 QQIAAVEEAYALMI----SNAQAGIDPLEADRLFHIRLAEATGNSVLVGLVTQL-FDARL 171 Query: 172 AVNMLRHLMQIPPWKRSQDAMDEHRQIFELIRLQDAEGARRAMRGHIENARTR 224 R + Q+A+DEH + E +R ++ E AR AMR H++ A TR Sbjct: 172 GPLFKRLHSHFDGTRVWQEAIDEHALVMEALRQRNPEQARAAMRRHMDIAFTR 224 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.136 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 720,748 Number of extensions: 29259 Number of successful extensions: 132 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 118 Number of HSP's successfully gapped: 12 Length of query: 232 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 150 Effective length of database: 1,231,600 Effective search space: 184740000 Effective search space used: 184740000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)