BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0177.p (302 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311571|ref|YP_003775663.1| LysR family transcription regul... 545 e-156 gi|300310637|ref|YP_003774729.1| LysR family transcription regul... 102 3e-23 gi|300313102|ref|YP_003777194.1| LysR family transcription regul... 100 2e-22 gi|300312961|ref|YP_003777053.1| transcription regulator protein... 94 1e-20 gi|300309386|ref|YP_003773478.1| LysR family transcription regul... 94 2e-20 >gi|300311571|ref|YP_003775663.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 313 Score = 545 bits (1403), Expect = e-156, Method: Compositional matrix adjust. Identities = 275/312 (88%), Positives = 283/312 (90%), Gaps = 11/312 (3%) Query: 1 MELRQLRYFVAIVDHGSLSRAARVLHIAQPALTQQIRQLEDEMAAQLLHRSAQGVIATDA 60 MELRQLRYFVAIVDHGSLSRAAR LHIAQPALTQQIRQLEDE+AAQLLHRSAQGVIATDA Sbjct: 1 MELRQLRYFVAIVDHGSLSRAARALHIAQPALTQQIRQLEDELAAQLLHRSAQGVIATDA 60 Query: 61 GKVFYEHALAILKQVQDAKQAVAQSTDKPSGTVALGIPQSVSNALALPLLNAVRSIYPEI 120 GKVFYEHALAILKQVQDAKQAV QS DKPSGTVALGIPQSVSNALALPLLNAVRS YPEI Sbjct: 61 GKVFYEHALAILKQVQDAKQAVGQSADKPSGTVALGIPQSVSNALALPLLNAVRSTYPEI 120 Query: 121 TLQLTEELTGNLITQLKSGRINLAVLFDDGQLSSFAATPMIEEEMMYITRAKSRYGVKGR 180 TLQLTEELTGNLITQLKSGRINLAVLFDDGQLSSFAATPMIEEEMMYITRAKS+YGV GR Sbjct: 121 TLQLTEELTGNLITQLKSGRINLAVLFDDGQLSSFAATPMIEEEMMYITRAKSQYGVAGR 180 Query: 181 KGVPLAKAIEAPLILPGLAHGVRPRIESLVRGQGMSLDNANR-----------HVXFGAT 229 K VPLA+AI+APLILPGLAHGVRPRIE+LVR QGMSLDN GAT Sbjct: 181 KSVPLARAIQAPLILPGLAHGVRPRIENLVRSQGMSLDNVIEINSVAILKSAILADIGAT 240 Query: 230 ILPVAPLLADIERGEMVAHAIAGEQISRTLVLCASRNIPLTTAAAAVERLVLDVTDALCR 289 ILPVAPLLADIERGEMVAH IAGE+ISRTL LCASRNIPLTTAAAAVE+LVLDVTD LCR Sbjct: 241 ILPVAPLLADIERGEMVAHRIAGERISRTLALCASRNIPLTTAAAAVEQLVLDVTDELCR 300 Query: 290 SGQWGHTRLLER 301 SG+WGHT LLER Sbjct: 301 SGRWGHTELLER 312 >gi|300310637|ref|YP_003774729.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 326 Score = 102 bits (255), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 63/159 (39%), Positives = 96/159 (60%), Gaps = 6/159 (3%) Query: 1 MELRQLRYFVAIVDHGSLSRAARVLHIAQPALTQQIRQLEDEMAAQLLHRSAQGVIATDA 60 M++RQL+YFVA+ + + +RA+ LHIAQP L++QI+ LE+E+ QLL R+++ + T+A Sbjct: 1 MDIRQLKYFVAVANTRNFTRASEQLHIAQPPLSRQIQLLEEELGVQLLLRNSRPLRLTEA 60 Query: 61 GKVFYEHALAILKQVQDAKQAVAQSTDKPSGTVALGIPQSVSNALALPLL-NAVRSIYPE 119 G+VFYE AL IL ++ K A Q T+++G S LP+L +R YPE Sbjct: 61 GRVFYEQALQILNRLDQLKNATQQIGLNQRQTLSIGFVASTLYG-GLPMLVRKLRQHYPE 119 Query: 120 ITLQLTEELTGNLITQLKSGRINLAVLFDDGQLSSFAAT 158 + +QL E + LKSGRI++ G++ S AT Sbjct: 120 VDIQLLELTSMQQFAALKSGRIDVGF----GRIRSNDAT 154 >gi|300313102|ref|YP_003777194.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 300 Score = 100 bits (248), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 65/221 (29%), Positives = 108/221 (48%), Gaps = 17/221 (7%) Query: 1 MELRQLRYFVAIVDHGSLSRAARVLHIAQPALTQQIRQLEDEMAAQLLHRSAQGVIATDA 60 +ELR L YF + + RAA +LHI+QP LT+QI LE E+ AQL RS + + T A Sbjct: 2 IELRHLTYFRTVAETLHFGRAAELLHISQPPLTRQIAALEKELGAQLFDRSKRAIQLTAA 61 Query: 61 GKVFYEHALAILKQVQDAKQAVAQSTDKPSGTVALGIPQSVSNALALPLLNAVRSIYPEI 120 GK FY I K ++ AK+ V+ S+ SG + +G S + + + + YPE+ Sbjct: 62 GKYFYRDTTEIFKALERAKRNVSSSSTGKSGALKVGFMMSTAYNILPSVTRHYSAAYPEV 121 Query: 121 TLQLTEELTGNLITQLKSGRINLAVLFDDGQLSSFAATPMIEEEMMYITRAKSRYGVKGR 180 ++LTE + L T ++ +I++ +++ + + E ++ + R + GR Sbjct: 122 DMRLTEYVPNLLATDIEDEKIDVGIMYRPEDCRRLDSHTIYAEPLLAVLPRDHR--LAGR 179 Query: 181 KGVPLAKAIEAPLI-LPGLA--------------HGVRPRI 206 + + A+ E I +P + HG RPRI Sbjct: 180 QSISAAELAEDAFISIPRMIAPVVYDLIQQHCQLHGFRPRI 220 >gi|300312961|ref|YP_003777053.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 300 Score = 94.0 bits (232), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 54/146 (36%), Positives = 85/146 (58%), Gaps = 6/146 (4%) Query: 1 MELRQLRYFVAIVDHGSLSRAARVLHIAQPALTQQIRQLEDEMAAQLLHRSAQGVIATDA 60 MELR L+YF A+ S SRAA +LHIAQP L++QIRQLE+ + +L+ R+++ + T A Sbjct: 1 MELRHLKYFNAVASTLSFSRAAELLHIAQPPLSRQIRQLEEMLGVELIDRASRPIALTMA 60 Query: 61 GKVFYEHALAI---LKQVQDAKQAVAQSTDKPSGTVALGIPQSVSNALALPLLNAVRSIY 117 GK FYE L + L+Q+++ + +A+ +G S L ++ R+ Sbjct: 61 GKFFYEQTLQVLSRLEQIEEGTRVIARGRQH---WFNIGFVPSALYGLLPEMIKRFRTEM 117 Query: 118 PEITLQLTEELTGNLITQLKSGRINL 143 PEI + +E +T + LKSGRI++ Sbjct: 118 PEIEIGFSEIVTMEQVEALKSGRIDV 143 >gi|300309386|ref|YP_003773478.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 301 Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 69/218 (31%), Positives = 107/218 (49%), Gaps = 6/218 (2%) Query: 1 MELRQLRYFVAIVDHGSLSRAARVLHIAQPALTQQIRQLEDEMAAQLLHRSAQGVIATDA 60 M++R LRYF V H S SRAA LH+ Q +++ +RQLE+E+ A LL R + + TD Sbjct: 1 MDIRALRYFTETVRHSSFSRAADALHVTQSTVSKMVRQLEEEVDAPLLIRDGRRLQLTDT 60 Query: 61 GKVFYEHALAILKQVQDAKQAVAQSTDKPSGTVALGIPQSVSNALALPLLNAVRSIYPEI 120 G+V YE IL +Q V + SG + +GIP + N L P+L A R +P+I Sbjct: 61 GRVVYEQGQQILAAMQRLHAEVRDTKALRSGRLEIGIPPMI-NILCTPVLKAFRERHPDI 119 Query: 121 TLQLTEELTGNLITQLKSG--RINLAVLFDDGQLSSFAATPMIEEEMMYITRAKSRYGVK 178 + L E+ + ++ +G I + VL D +L P+ M + +A S K Sbjct: 120 AVVLQEDTGPQIEQRVANGELEIGMTVLPADPEL-GLETLPVASYPMWAVAQAGSFQ--K 176 Query: 179 GRKGVPLAKAIEAPLILPGLAHGVRPRIESLVRGQGMS 216 R + A+ PL+L G+ + + R G+ Sbjct: 177 NRASLRCAQLDGMPLVLLNNEFGLTRSLRGVFREHGIK 214 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.133 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 879,654 Number of extensions: 34348 Number of successful extensions: 227 Number of sequences better than 1.0e-08: 72 Number of HSP's gapped: 219 Number of HSP's successfully gapped: 72 Length of query: 302 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 217 Effective length of database: 1,217,395 Effective search space: 264174715 Effective search space used: 264174715 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)