BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0174.p (631 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311573|ref|YP_003775665.1| DNA polymerase III subunit alph... 1122 0.0 gi|300312866|ref|YP_003776958.1| DNA polymerase III subunit alph... 283 3e-77 >gi|300311573|ref|YP_003775665.1| DNA polymerase III subunit alpha [Herbaspirillum seropedicae SmR1] Length = 942 Score = 1122 bits (2902), Expect = 0.0, Method: Compositional matrix adjust. Identities = 563/659 (85%), Positives = 583/659 (88%), Gaps = 33/659 (5%) Query: 6 ELRYEYPDELVPLGMSPADYLRQETLAGAFKRYPQGIPGEVRSQIEMELSLIAQKEYEAY 65 ELRYEYPDELVPLGMS ADYLRQ+TLAGA KRYPQG+PG VR QIE EL+LIAQKEYEAY Sbjct: 284 ELRYEYPDELVPLGMSAADYLRQQTLAGAAKRYPQGLPGGVREQIEAELALIAQKEYEAY 343 Query: 66 FLTVYDLVKFARSRGILCQGRGSAANSAVCYCLGVTEVDPTSTRLLFARFISEKREEPPD 125 FLTVYDLV+FARSRGILCQGRGSAANSAVCYCLGVTEVDPTSTRLLFARFISEKREEPPD Sbjct: 344 FLTVYDLVQFARSRGILCQGRGSAANSAVCYCLGVTEVDPTSTRLLFARFISEKREEPPD 403 Query: 126 IDVDFEHQRREEVIQHIYRKYGRRRAALAAAVHSYRPRGALREVGKALGVDAAIVDTVAK 185 IDVDFEHQRREEVIQHIYRKYGRRRAALAAAVHSYRPRGALREVGKALGVDAAIVD VAK Sbjct: 404 IDVDFEHQRREEVIQHIYRKYGRRRAALAAAVHSYRPRGALREVGKALGVDAAIVDAVAK 463 Query: 186 SQHWFDSREELLARFAEAGLDPELPQIGLWASITGKLLRFPRHLSQHTGGFVIARGQLSR 245 SQHWFDSREELLARFAEAGLDPELPQIGLWASITGKLLRFPRHLSQHTGGFVIARGQLSR Sbjct: 464 SQHWFDSREELLARFAEAGLDPELPQIGLWASITGKLLRFPRHLSQHTGGFVIARGQLSR 523 Query: 246 LVPIQNAAMEERSVIEWDKDDLESLKLLKVDVLALGMLTALRRSLELVSLRRGLPQVMQM 305 LVPIQNAAM ER VIEWDKDDLESLKLLKVDVLALGMLTALRR+LELVSLRRGLP+VMQM Sbjct: 524 LVPIQNAAMPERCVIEWDKDDLESLKLLKVDVLALGMLTALRRTLELVSLRRGLPEVMQM 583 Query: 306 YDIPREDPATFDMICKADTIGVFQIESRAQMSMLPRMQPRTQYDLVVQVAIVRPGPIQGG 365 + IPREDPATF+MICKADTIGVFQIESRAQMSMLPRMQPRTQYDLVVQVAIVRPGPIQGG Sbjct: 584 HAIPREDPATFEMICKADTIGVFQIESRAQMSMLPRMQPRTQYDLVVQVAIVRPGPIQGG 643 Query: 366 MVHPYLRRRELVRSGGSFDYPDNTSKSGKIRKVLERTLGIPIFQEQVMDVAIEAAGYSPS 425 MVHPYLRRRELVR GGSFDYPDNTSKSGKI+KVLERTLGIPIFQEQVMDVAIEAAGYSPS Sbjct: 644 MVHPYLRRRELVREGGSFDYPDNTSKSGKIKKVLERTLGIPIFQEQVMDVAIEAAGYSPS 703 Query: 426 EADDLRRSMAAWKRKGGMGPHHERLVLGMTDNGYSREFAESIFNQIEGFGEYGFPESHAA 485 EADDLRRSMAAWKRKGGMGPH+ERLVLGMTDNGYSREFAESIF QIEGFGEYGFPESHAA Sbjct: 704 EADDLRRSMAAWKRKGGMGPHYERLVLGMTDNGYSREFAESIFKQIEGFGEYGFPESHAA 763 Query: 486 SFALLTYFSSWLKCHEPEAFLCGLLNSQPMGFYSPSQLIQDARRHGVKVLPVNVLRSRWE 545 SFALLTYFSSWLKCHEPEAFLCGLLNSQPMGFYSPSQLIQDARRHGV+VLP NV+RSRWE Sbjct: 764 SFALLTYFSSWLKCHEPEAFLCGLLNSQPMGFYSPSQLIQDARRHGVQVLPANVVRSRWE 823 Query: 546 SILELDPAGQARPG---------------------------------LSRAVXWTATPCK 572 S LEL + ARP L+R C+ Sbjct: 824 STLELPSSAGARPAVRLGLSLLRSMPAEAAQRIEQARAQRPFADVDDLARRAGLDRPACR 883 Query: 573 RWQRVMPCASWPDTGALRSGMPWAQCPTVTCCARHRAVMTRSSWKHPAKATRSSTTTAP 631 W++ MPCA+WP TGA RSGM WA+CPT CCA MT +W PAK TRSSTTTAP Sbjct: 884 HWRQAMPCANWPATGARRSGMRWARCPTAICCAAPPGAMTPYNWTLPAKVTRSSTTTAP 942 >gi|300312866|ref|YP_003776958.1| DNA polymerase III subunit alpha [Herbaspirillum seropedicae SmR1] Length = 1152 Score = 283 bits (724), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 191/580 (32%), Positives = 306/580 (52%), Gaps = 49/580 (8%) Query: 10 EYPDELVPLGMSPADYLRQETLAGAFKRYPQGIPGEVR---------SQIEMELSLIAQK 60 + PD P GM+ D+L +T AG R + P E +++E E + I + Sbjct: 282 QLPDFPTPDGMTIDDFLVAQTKAGLEVRLKELFPNEAEREKQRPRYEARLEFENNTIIKM 341 Query: 61 EYEAYFLTVYDLVKFARSRGI-LCQGRGSAANSAVCYCLGVTEVDPTSTRLLFARFISEK 119 ++ YFL V D +++A++ G+ + GRGS A S V YCL +T++DP LLF RF++ + Sbjct: 342 KFPGYFLIVADFIQWAKNNGVPVGPGRGSGAGSLVAYCLLITDLDPLRYNLLFERFLNPE 401 Query: 120 REEPPDIDVDFEHQRREEVIQHIYRKYGRRRAALAAAVHSYRPRGALREVGKALGVDAAI 179 R PD D+DF + R+ VIQ++ +YG+ + A + +GA+R+VG+ L + Sbjct: 402 RVSMPDFDIDFCQEGRDRVIQYVKDRYGKEAVSQIATFGTMAAKGAVRDVGRVLDLGYNF 461 Query: 180 VDTVAKSQHW--------FDSREE--LLARFAEAGLDPELPQI-GLWASITGKLLRFPRH 228 D ++K + D+ EE LL E + E+ Q+ GL + G R+ Sbjct: 462 CDGISKLIPFKPGKLVTLADAIEEEPLLKERLEN--EEEVKQLMGLAQQVEG----IARN 515 Query: 229 LSQHTGGFVIARGQLSRLVPIQNAAMEERSVIEWDKDDLESLKLLKVDVLALGMLTALRR 288 + H GG +IA G+L+ P+ + V ++DKDD+E++ L+K D L L LT L R Sbjct: 516 IGMHAGGVLIAPGKLTDFCPLYTQGGDSGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDR 575 Query: 289 SLELVSLRRGLPQVMQMYDI---PREDPATFDMICKADTIGVFQIESRAQMSMLPRMQPR 345 ++ + R L M +D+ P +D +++++ KA T+ VFQ+ESR ML +P Sbjct: 576 AVRYI---RMLDPAMADFDLAKLPLDDRPSYELLTKAKTVAVFQLESRGMQGMLKDARPD 632 Query: 346 TQYDLVVQVAIVRPGPIQGGMVHPYLRRRELVRSGGSFDYPDNTSKSGKIRKVLERTLGI 405 D++ VA+ RPGP+ ++ + +R+ G +FDYPD ++ +L T GI Sbjct: 633 RFEDIIALVALYRPGPMD--LIPDFCKRKH----GEAFDYPDPRTEG-----ILSETYGI 681 Query: 406 PIFQEQVMDVAIEAAGYSPSEADDLRRSMAAWKRKGGMGPHHERLVLGMTDNGYSREFAE 465 ++QEQVM +A GYS AD LRR+M K+ M H E G NG + A+ Sbjct: 682 MVYQEQVMQMAQVIGGYSLGGADLLRRAMGK-KKAEEMAKHRELFREGAAKNGLDQAKAD 740 Query: 466 SIFNQIEGFGEYGFPESHAASFALLTYFSSWLKCHEPEAFLCGLLNSQPMGFYSPSQLIQ 525 IF+ +E F YGF +SHAA++ALL+Y++++LK H P AF+ L+ LI+ Sbjct: 741 EIFDLMEKFAGYGFNKSHAAAYALLSYYTAYLKAHHPAAFMAANLSLAMEDTDKVKILIE 800 Query: 526 DA-RRHGVKVLPVNVLRSRWESILELDP---AGQARPGLS 561 DA + +LP ++ +S + + +P A Q R GL Sbjct: 801 DAIDICKLAILPPDINKSDYRFMPVGEPGKKATQIRYGLG 840 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.136 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,980,756 Number of extensions: 84001 Number of successful extensions: 207 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 202 Number of HSP's successfully gapped: 2 Length of query: 631 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 540 Effective length of database: 1,188,985 Effective search space: 642051900 Effective search space used: 642051900 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)