BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0171.p
         (249 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311575|ref|YP_003775667.1| hypothetical protein Hsero_2260...   390   e-110

>gi|300311575|ref|YP_003775667.1| hypothetical protein Hsero_2260
           [Herbaspirillum seropedicae SmR1]
          Length = 287

 Score =  390 bits (1001), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 206/249 (82%), Positives = 219/249 (87%), Gaps = 1/249 (0%)

Query: 1   MLTSSSPVPRPEIIHPSLWLASQLARGGARGVASGFEALDAELPERGWPPGVLIELLLPQ 60
           ML+ SSP   PE IHP+LWLASQLARG  RGV+SGFEALDAELP RGWP GVLIELLLPQ
Sbjct: 40  MLSPSSPARTPETIHPALWLASQLARGNGRGVSSGFEALDAELPGRGWPTGVLIELLLPQ 99

Query: 61  DGIGELRLLRPVLARAPATARRPPQAGRIALLQAPHQVNAPGWAHMGVDASRLLQLQADH 120
           DG+GELRLLRP+LA+ P   R    +GRIALLQAPH +NAPGWA MGV A+RLLQLQAD 
Sbjct: 100 DGVGELRLLRPLLAQ-PQRLRPGAPSGRIALLQAPHAINAPGWAAMGVPATRLLQLQADT 158

Query: 121 AADACWAAEQVLRADSCQALLMWQPRLRKGDHDLLRRLHVAAQAGQTLFFMLRPLSCARE 180
             DACWAAEQVLRADSCQALLMWQ RLRKGDHDLLRRLHVAAQAGQTLFFMLRPL+CARE
Sbjct: 159 PVDACWAAEQVLRADSCQALLMWQARLRKGDHDLLRRLHVAAQAGQTLFFMLRPLACARE 218

Query: 181 PSPAPLRLTLKSARDGLEIGFLKRRGPLREQSLFLPLLPSPNLQRHVTPVDRRTPATAAA 240
            SPAPLRLTL+ A  GL+IGFLKRRGPLRE SLFLPL PSPNLQRHV+PVDRRTPATAAA
Sbjct: 219 ASPAPLRLTLRPAPGGLDIGFLKRRGPLREHSLFLPLTPSPNLQRHVSPVDRRTPATAAA 278

Query: 241 GSLPSELAG 249
           GSLPSELAG
Sbjct: 279 GSLPSELAG 287


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 723,209
Number of extensions: 25756
Number of successful extensions: 100
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 166
Effective length of database: 1,226,865
Effective search space: 203659590
Effective search space used: 203659590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)