BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0164.p
         (239 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311582|ref|YP_003775674.1| intracellular protease/amidase ...   426   e-121
gi|300312374|ref|YP_003776466.1| intracellular protease/amidase ...    77   1e-15

>gi|300311582|ref|YP_003775674.1| intracellular protease/amidase
           [Herbaspirillum seropedicae SmR1]
          Length = 242

 Score =  426 bits (1095), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 213/242 (88%), Positives = 223/242 (92%), Gaps = 4/242 (1%)

Query: 2   MSNRYNQLKVAVLVTDGFEQAELLEPKKALEAAGATVHILSDKSDSVQGFKHVDKGEVVS 61
           MSNRY+QLKVAVLVTDGFEQAELLEPKKALEAAGATVHILSDKSDSVQGFKHVDKGEVVS
Sbjct: 1   MSNRYHQLKVAVLVTDGFEQAELLEPKKALEAAGATVHILSDKSDSVQGFKHVDKGEVVS 60

Query: 62  VDGGLDSANPADYSAVLLPGGVVNGDAMRLLPEARNFVRAANDAEKPIASICHGGWLLIS 121
           VDG LD+A+  DYSAVLLPGGVVNGDAMRLLP+ARNFVRAANDAEKPIASICHGGWLLIS
Sbjct: 61  VDGSLDNASADDYSAVLLPGGVVNGDAMRLLPQARNFVRAANDAEKPIASICHGGWLLIS 120

Query: 122 AGIAKGRTVTSWPSLQDDFKNAGSQWVDQEVVRDENFVSSRKPTDIPAFNNEFMKLLDEQ 181
           AGIAKGRTVTSWPSLQDDFKNAGSQWVDQEVVRDENFVSSRKP DIPAFNNEFMKLLDEQ
Sbjct: 121 AGIAKGRTVTSWPSLQDDFKNAGSQWVDQEVVRDENFVSSRKPADIPAFNNEFMKLLDEQ 180

Query: 182 QRREQRQGPSGAS-DDASASAGG---TSKPQLSEKGSAPAAPPNHESEAFAVAHGESAQS 237
           QRRE RQ PS A+ D+A   AGG   T+ P LS KG APAAPP+HE+EAFAVAHGE+ QS
Sbjct: 181 QRREHRQPPSSAAGDEAVTDAGGEAATAAPSLSAKGRAPAAPPSHENEAFAVAHGEAPQS 240

Query: 238 DG 239
           DG
Sbjct: 241 DG 242


>gi|300312374|ref|YP_003776466.1| intracellular protease/amidase
           [Herbaspirillum seropedicae SmR1]
          Length = 195

 Score = 76.6 bits (187), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 98/184 (53%), Gaps = 16/184 (8%)

Query: 10  KVAVLVTDGFEQAELLEPKKALEAAGATVHILS------DK-SDSVQGFK----HVDK-G 57
           K+ +L  D  E  E + P +AL+  G TVH +       DK   ++  F+    + +K G
Sbjct: 7   KILLLTGDFAEDYETMVPFQALQMVGHTVHAVCPGKKAGDKVKTAIHDFEGDQTYTEKPG 66

Query: 58  EVVSVDGGLDSANPADYSAVLLPGGVVNGDAMRLLPEARNFVRAANDAEKPIASICHGGW 117
              +++   D  + A Y A+++ GG    + +RL P+    V+A   A+KPIA++CHG  
Sbjct: 67  HQFALNASFDDVSAAGYDALVVAGGRAP-EYLRLNPKVIELVQAFAKADKPIAAVCHGPQ 125

Query: 118 LLISAGIAKGRTVTSWPSLQDDFKNAGSQWVDQEV---VRDENFVSSRKPTDIPAFNNEF 174
           +L +AG+ +G+ V+++P+   + K AG Q+ D  V   + D   V++      PA+  +F
Sbjct: 126 VLAAAGVLEGKKVSAYPACAPEVKLAGGQFADIAVDAAITDGKLVTAPAWPAHPAWLAQF 185

Query: 175 MKLL 178
           +++L
Sbjct: 186 LQVL 189


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.310    0.128    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 700,780
Number of extensions: 27521
Number of successful extensions: 99
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 2
Length of query: 239
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 157
Effective length of database: 1,231,600
Effective search space: 193361200
Effective search space used: 193361200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 129 (54.3 bits)