BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0159.p
         (857 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311586|ref|YP_003775678.1| ATP-dependent DNA ligase [Herba...  1366   0.0  

>gi|300311586|ref|YP_003775678.1| ATP-dependent DNA ligase
           [Herbaspirillum seropedicae SmR1]
          Length = 856

 Score = 1366 bits (3535), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 687/856 (80%), Positives = 751/856 (87%), Gaps = 7/856 (0%)

Query: 4   SSSALDRYHAKRDFSITPEPSGHAQSARRQGKQASPEGLQFFIQRHHARRLHYDFRLELD 63
           S+  LDRY AKRDF+ITPEPSGHA S  R G Q+  + LQFFIQRHHARRLHYDFRLELD
Sbjct: 2   STGKLDRYRAKRDFTITPEPSGHA-SRSRAGAQS--QSLQFFIQRHHARRLHYDFRLELD 58

Query: 64  GVLKSWAVPKGPSLDPHDKRLAVRVEDHPFDYGTFEGDIPAHQYGAGHVVLWDRGQWQPH 123
           GVLKSWAVPKGPSLDPHDKRLAVRVEDHPFDYG+FEGDIPAHQYGAGHVVLWDRGQW+PH
Sbjct: 59  GVLKSWAVPKGPSLDPHDKRLAVRVEDHPFDYGSFEGDIPAHQYGAGHVVLWDRGQWRPH 118

Query: 124 GDPQAGLRKGHLSFLLTGEKLQGRWALVRMGKPAEDGKENWLLIKEEDDAARNGAAAAIT 183
           GD +AGL KGHLSF L GEKL GRWALVRMGKPA DGKENWLLIK++D AA +G  AAIT
Sbjct: 119 GDARAGLAKGHLSFELEGEKLHGRWALVRMGKPAADGKENWLLIKDDDAAAASGEQAAIT 178

Query: 184 DLRPESVKDLGDTPSAGKAIAPSPV--QSMSDMPERMEAQLATLADTAPQGEEWLSELKF 241
           +LRPESVKDLGD     KA A +     S   MP +M+AQLATL D AP GE+WL ELKF
Sbjct: 179 ELRPESVKDLGDQAPLAKARASAKAAPDSTGPMPAQMQAQLATLVDRAPAGEQWLCELKF 238

Query: 242 DGYRGLCRIENGRAAIHTREGLDWSHRWPILVEALAKLPVDQAWIDGEVVALDADGRVSF 301
           DGYRGLCRI++G+AAI+TREGLDWSHRWPILV+ALA+LPVD+AWIDGEVVALDA G++SF
Sbjct: 239 DGYRGLCRIDHGQAAIYTREGLDWSHRWPILVQALARLPVDEAWIDGEVVALDAQGQISF 298

Query: 302 EALQNLVRGDRQQANGIRLALYAFDLLYLNGHDVRELPLHQRKELLREVIPGGDEQGLLL 361
           EALQNL RGDRQQA+GIRLALYAFDLLYLNGHD+R++PL QRK LLRE+IPG D +GLLL
Sbjct: 299 EALQNLARGDRQQADGIRLALYAFDLLYLNGHDLRDIPLRQRKALLRELIPGSDPEGLLL 358

Query: 362 YSEHIAGHADEVFRHACQHGMEGIVVKRADAPYSGRRDRNWIKVKCEHRQEFVIAGYTEP 421
           YSEHI GHA EVFRHACQHGMEGIV+KRADAPY+GRRDR W+K+KCEHRQEFVIAGYTEP
Sbjct: 359 YSEHIEGHAAEVFRHACQHGMEGIVLKRADAPYTGRRDRYWLKLKCEHRQEFVIAGYTEP 418

Query: 422 AGQRSGFGAILVGVHDEQGQLQYAGRVGTGFDERLLGSMLKQFRQREQEQPAFVNPPTGQ 481
           AGQRSGFGAILVGV+DE  QL+YAGRVGTGFD++LL ++LKQF   EQ+QPAF NPPTGQ
Sbjct: 419 AGQRSGFGAILVGVYDEHEQLRYAGRVGTGFDDKLLETLLKQFGPLEQDQPAFANPPTGQ 478

Query: 482 QRRGVHWLKPELVAEVKFAQWTKSGILRHGSFVALREDKAPEEIVRETPGSASDEVHPEN 541
           QRRGVHWL+P LVAEV+FAQWT +GILRHGSFVALREDK P +I RE P   ++      
Sbjct: 479 QRRGVHWLRPALVAEVRFAQWTSAGILRHGSFVALREDKDPHQIRREGPQPLAEAKADAK 538

Query: 542 AEAKPKAPARRSAQDLSRPVTVEGVKLTHPGKILFPDTGLTKLELARYYQSVAPWILPEL 601
           A A   A +R  A DLS PVTV GVKLTHPGKILFPDTGLTKLELARYYQSVAPWILPEL
Sbjct: 539 APAAAPARSRGKASDLSAPVTVAGVKLTHPGKILFPDTGLTKLELARYYQSVAPWILPEL 598

Query: 602 KQRPLSLVRCPDGHAGKCFFQKHTGQGMPDAIETIEVPEGEGKARYMMVNDVAGLVATVQ 661
           +QRPLSLVRCPDGHAGK FFQKHTGQGMP+AI+TIEVPEGEG A+YMMVNDVAGLVATVQ
Sbjct: 599 RQRPLSLVRCPDGHAGKRFFQKHTGQGMPEAIDTIEVPEGEGHAQYMMVNDVAGLVATVQ 658

Query: 662 MGVLELHAWGATGRALDKPDRVVFDLDPAPDVPWDTVVEGAQLVRGLLEELGLSCLLKTS 721
           MGVLELHAWGATG AL+ PDRVVFDLDPA DVPW TVVEGAQLVRGLL+E+GL C LKTS
Sbjct: 659 MGVLELHAWGATGAALNHPDRVVFDLDPADDVPWATVVEGAQLVRGLLKEIGLDCFLKTS 718

Query: 722 GGKGLHVMVPIRPEHDWDVIKDWAHRLAAHLARLLPDRFIARMSKSARTGKIFIDYLRNA 781
           GGKGLHVMVPIRPEHDW V+KDWAHR AAHLAR LPDRFIA+MSK+AR GKIFIDYLRNA
Sbjct: 719 GGKGLHVMVPIRPEHDWAVVKDWAHRFAAHLARHLPDRFIAKMSKAARNGKIFIDYLRNA 778

Query: 782 PGATTVVAYSVRARDGAPVSVPITWEELEQ--GVQADHFRVSTMRKRLESLSHSDPWADF 839
           PGATTVVAYSVRARDGAPVSVPITWEELEQ  G++ADHFRVSTM  R+ SL   DPWA F
Sbjct: 779 PGATTVVAYSVRARDGAPVSVPITWEELEQGKGIKADHFRVSTMPARIRSLEQHDPWAHF 838

Query: 840 NKSPQRLTRAMLDAFD 855
            ++PQRLT+AML AFD
Sbjct: 839 GQAPQRLTKAMLAAFD 854


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,961,161
Number of extensions: 136889
Number of successful extensions: 375
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 373
Number of HSP's successfully gapped: 1
Length of query: 857
Length of database: 1,619,870
Length adjustment: 93
Effective length of query: 764
Effective length of database: 1,179,515
Effective search space: 901149460
Effective search space used: 901149460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 135 (56.6 bits)