BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0157.p
         (371 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311587|ref|YP_003775679.1| nuclease subunit of the excinuc...   527   e-151

>gi|300311587|ref|YP_003775679.1| nuclease subunit of the
           excinuclease complex protein [Herbaspirillum seropedicae
           SmR1]
          Length = 317

 Score =  527 bits (1358), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 260/314 (82%), Positives = 282/314 (89%), Gaps = 6/314 (1%)

Query: 62  QEGQRGLRHA------GLPRATFNAPQPAAHRAATFSYPLHIDRASIEALPAACGVYILR 115
           QEG+ GL         GLP ATFNAPQPAAHRAATFSYPLHIDRASIEALP+ACGVYILR
Sbjct: 2   QEGEHGLPALPSFPPRGLPLATFNAPQPAAHRAATFSYPLHIDRASIEALPSACGVYILR 61

Query: 116 GVNDQALYVGRSVNLRSRVMAHLHNHEEQFLIGQTRRIECRRTAGELGAALLESSLLRDL 175
           G  DQALYVGRSVNLRSRV+AHLH+ E+QFLIG+TRRIEC RTAGELGAALLE+SLLRDL
Sbjct: 62  GEGDQALYVGRSVNLRSRVLAHLHHAEDQFLIGRTRRIECLRTAGELGAALLENSLLRDL 121

Query: 176 RPAHNKKQRTKRGLFTLRLNDAGQPQVAQVEEREFSRAENLFGIYTSERAAQEALQKMVE 235
           RPAHNKKQR KRGLFTLRL++ GQP VAQV + EF+RA  LFG+YTSERAAQEAL K+VE
Sbjct: 122 RPAHNKKQRAKRGLFTLRLDEQGQPLVAQVADHEFNRAGKLFGLYTSERAAQEALHKLVE 181

Query: 236 RHGLCSIATGLEQPDGIGMACFGRQIRRCRGACTGEETHEQHQQRLMQALEDLRILPWPY 295
            HGLCSIATGLEQ +G GMACFGRQIRRCRGACTGEE+HEQHQ RL+QALEDLRILPWPY
Sbjct: 182 HHGLCSIATGLEQGEGPGMACFGRQIRRCRGACTGEESHEQHQSRLLQALEDLRILPWPY 241

Query: 296 AGPMALVEQGDGWQQVHVIDHWRYLGSLDRDNRQLASRPAASLKGFDLDSYKLMIQPYLL 355
           AGPM +VEQGDGWQQ+HVID WRYLGSLDR  R+L +RPAASLKGFDLD+YKL+IQPYLL
Sbjct: 242 AGPMGIVEQGDGWQQIHVIDQWRYLGSLDRQQRRLPARPAASLKGFDLDTYKLVIQPYLL 301

Query: 356 GQLELRPLPGLPLA 369
           GQLELRPLPGLPLA
Sbjct: 302 GQLELRPLPGLPLA 315


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,073,666
Number of extensions: 42728
Number of successful extensions: 137
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 2
Length of query: 371
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 284
Effective length of database: 1,207,925
Effective search space: 343050700
Effective search space used: 343050700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)