BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0150.p (267 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311590|ref|YP_003775682.1| amino acid ABC transporter/sign... 476 e-136 gi|300310886|ref|YP_003774978.1| amino acid ABC transporter peri... 405 e-114 gi|300313535|ref|YP_003777627.1| amino acid ABC transporter/sign... 307 6e-85 gi|300309582|ref|YP_003773674.1| amino acid ABC transporter/sign... 158 4e-40 gi|300313169|ref|YP_003777261.1| amino acid transport periplasmi... 156 2e-39 >gi|300311590|ref|YP_003775682.1| amino acid ABC transporter/signal transduction system periplasmic protein/domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 267 Score = 476 bits (1225), Expect = e-136, Method: Compositional matrix adjust. Identities = 237/267 (88%), Positives = 245/267 (91%) Query: 1 MTSKHRLLALSIALGLGVLANAPAQADALADIQKAGVVRIGVPQDFAPFGSVNTDLQLQG 60 M R L++ LGL + A+ADALADIQK GVVRIGVPQDFAPFGSVNTDLQLQG Sbjct: 1 MQMSPRKTMLAVVLGLAAMQGGLARADALADIQKNGVVRIGVPQDFAPFGSVNTDLQLQG 60 Query: 61 LDIDVAKLIAQKMGVKVQLVPVASANRIAYLQTHKADLVISTLGKNAEREKVIDFSQPYA 120 LDIDVA+LIAQKMGVK+QLVPVASANRIAYLQTHKADLVISTLG+NAEREKVIDFSQPYA Sbjct: 61 LDIDVARLIAQKMGVKLQLVPVASANRIAYLQTHKADLVISTLGRNAEREKVIDFSQPYA 120 Query: 121 PYNNSVFGVASVAVSGPADLAGKTVGVARGTFQDLQLTDTAPKSATIKRYEDNNAMISAY 180 PYNNSVFGVASV VSGPADLA KTVGVARGTFQDLQLTDTAPKSATIKRYEDNNAMISAY Sbjct: 121 PYNNSVFGVASVKVSGPADLADKTVGVARGTFQDLQLTDTAPKSATIKRYEDNNAMISAY 180 Query: 181 VSGQVQLVGTGDFVAYALAEKAPNNKPVLKYIIQESACNVGLNKGETALLGKVNEVLTAA 240 VSGQVQLVGTGDFVAYALAEKAPNNKPVLKYIIQESACNVGLNKGE ALL KVNE LTAA Sbjct: 181 VSGQVQLVGTGDFVAYALAEKAPNNKPVLKYIIQESACNVGLNKGEPALLAKVNEALTAA 240 Query: 241 KKSGELNAIVQKWLNVPLPAKMASTFQ 267 KKSGELN IVQKWLNVPLPAKMA+T Q Sbjct: 241 KKSGELNGIVQKWLNVPLPAKMAATLQ 267 >gi|300310886|ref|YP_003774978.1| amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 265 Score = 405 bits (1041), Expect = e-114, Method: Compositional matrix adjust. Identities = 194/259 (74%), Positives = 226/259 (87%) Query: 9 ALSIALGLGVLANAPAQADALADIQKAGVVRIGVPQDFAPFGSVNTDLQLQGLDIDVAKL 68 A++ +LGL +A PA AD LADIQKAGVV+IGVPQDFAP+GSV +DLQLQGLDIDVA+L Sbjct: 7 AIAASLGLMAVAVHPAMADTLADIQKAGVVKIGVPQDFAPYGSVTSDLQLQGLDIDVARL 66 Query: 69 IAQKMGVKVQLVPVASANRIAYLQTHKADLVISTLGKNAEREKVIDFSQPYAPYNNSVFG 128 +A+ MGVK +LVPV ++R+A+LQTHK DL+ISTLGKNAEREKVIDFSQ YAPYNNSVFG Sbjct: 67 VAKGMGVKAELVPVPISSRMAFLQTHKIDLIISTLGKNAEREKVIDFSQGYAPYNNSVFG 126 Query: 129 VASVAVSGPADLAGKTVGVARGTFQDLQLTDTAPKSATIKRYEDNNAMISAYVSGQVQLV 188 VA++ V+GPADLA +TVGVAR TF+DL LTD+ PKS IKRYEDNN +I+AYVSGQVQLV Sbjct: 127 VAAIKVAGPADLANQTVGVARSTFEDLMLTDSVPKSTVIKRYEDNNGLIAAYVSGQVQLV 186 Query: 189 GTGDFVAYALAEKAPNNKPVLKYIIQESACNVGLNKGETALLGKVNEVLTAAKKSGELNA 248 GTGDFVAYALAEK P NKP+LKYII S C VG+NKGE AL+ KVNE LTA+KKSGELN Sbjct: 187 GTGDFVAYALAEKTPANKPLLKYIINVSTCYVGMNKGEPALMAKVNEALTASKKSGELNG 246 Query: 249 IVQKWLNVPLPAKMASTFQ 267 IV+KWLNVPLP K+A+T+Q Sbjct: 247 IVKKWLNVPLPEKIATTYQ 265 >gi|300313535|ref|YP_003777627.1| amino acid ABC transporter/signal transduction system periplasmic protein/domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 260 Score = 307 bits (786), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 150/253 (59%), Positives = 191/253 (75%) Query: 8 LALSIALGLGVLANAPAQADALADIQKAGVVRIGVPQDFAPFGSVNTDLQLQGLDIDVAK 67 L L + G + + + A+ADAL DIQK G +R+ VP DF PFGSV+ DL+ QGLDIDVA Sbjct: 6 LLLGLMAGAMMFSASVARADALDDIQKHGTLRVAVPADFPPFGSVDADLKPQGLDIDVAT 65 Query: 68 LIAQKMGVKVQLVPVASANRIAYLQTHKADLVISTLGKNAEREKVIDFSQPYAPYNNSVF 127 LIA+K+GVKV+L+PV+SANRI YL T K DLVIS++GKNAEREKVIDFS YAP+ N VF Sbjct: 66 LIAKKLGVKVELIPVSSANRIPYLTTKKVDLVISSMGKNAEREKVIDFSAAYAPFFNGVF 125 Query: 128 GVASVAVSGPADLAGKTVGVARGTFQDLQLTDTAPKSATIKRYEDNNAMISAYVSGQVQL 187 G A ++V ADLAGKT+ V RG+ +DL+LT P SAT+KRYEDNN+ IS+++SGQVQL Sbjct: 126 GPADLSVKSAADLAGKTIAVTRGSVEDLELTKIVPASATVKRYEDNNSTISSFLSGQVQL 185 Query: 188 VGTGDFVAYALAEKAPNNKPVLKYIIQESACNVGLNKGETALLGKVNEVLTAAKKSGELN 247 V TG+ VA A+ + P KP K++I++S C +GLNKGE L KV+ +L +KK G L+ Sbjct: 186 VATGNVVAAAIIARNPPKKPETKFLIKDSPCFIGLNKGEKKLQDKVDAILAESKKDGSLS 245 Query: 248 AIVQKWLNVPLPA 260 AI QKWL +PLPA Sbjct: 246 AISQKWLGMPLPA 258 >gi|300309582|ref|YP_003773674.1| amino acid ABC transporter/signal transduction system periplasmic binding protein [Herbaspirillum seropedicae SmR1] Length = 269 Score = 158 bits (400), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 89/238 (37%), Positives = 134/238 (56%) Query: 25 QADALADIQKAGVVRIGVPQDFAPFGSVNTDLQLQGLDIDVAKLIAQKMGVKVQLVPVAS 84 QAD L I A +R+ + P+ + L+L G D++ A+ +A+ G+++++VP Sbjct: 27 QADQLDTILAAKKLRVAIDLAVPPYSMKDDKLRLIGSDVETAQRMAKDFGLELEVVPTTL 86 Query: 85 ANRIAYLQTHKADLVISTLGKNAEREKVIDFSQPYAPYNNSVFGVASVAVSGPADLAGKT 144 NR+ YLQT+KAD+VIS ER KVIDFS PYAP V S+ ++ PADLAGK Sbjct: 87 TNRVPYLQTNKADIVISAFSITPERAKVIDFSVPYAPILVVVGAPRSMKITSPADLAGKK 146 Query: 145 VGVARGTFQDLQLTDTAPKSATIKRYEDNNAMISAYVSGQVQLVGTGDFVAYALAEKAPN 204 + RGT D +LT AP SATI R++D+ ++A VSGQ + T + + +K P+ Sbjct: 147 IIATRGTTNDQELTKIAPSSATITRFDDDATSMTAMVSGQADIWATSPMLLKVVNQKNPS 206 Query: 205 NKPVLKYIIQESACNVGLNKGETALLGKVNEVLTAAKKSGELNAIVQKWLNVPLPAKM 262 K ++ + VGL KGE L K++ + +GELN I +K+ LP ++ Sbjct: 207 RDIESKLTLKANLLAVGLRKGEPRLKEKIDGWIRTNLSNGELNTIYKKYHEAELPPEI 264 >gi|300313169|ref|YP_003777261.1| amino acid transport periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 268 Score = 156 bits (394), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 86/229 (37%), Positives = 132/229 (57%) Query: 31 DIQKAGVVRIGVPQDFAPFGSVNTDLQLQGLDIDVAKLIAQKMGVKVQLVPVASANRIAY 90 DI+ V + + PFG N L+ QG D++ A+L+A+ +GV++++V V NRI + Sbjct: 32 DIKARKKVLVAIDLGAPPFGMTNAKLEPQGSDVETARLLAKDLGVELEIVQVTGPNRIPF 91 Query: 91 LQTHKADLVISTLGKNAEREKVIDFSQPYAPYNNSVFGVASVAVSGPADLAGKTVGVARG 150 L T KAD+VIS+ ER+KV+ F+QPY V + DL GK V V RG Sbjct: 92 LMTGKADMVISSFSITPERQKVVAFTQPYGASQFVVAAPKGENIKSLNDLVGKRVAVVRG 151 Query: 151 TFQDLQLTDTAPKSATIKRYEDNNAMISAYVSGQVQLVGTGDFVAYALAEKAPNNKPVLK 210 QD LT APK I R++D+ + +A +SGQV + T + +A A+A++ P+ K Sbjct: 152 NMQDSLLTPIAPKGTNIVRFDDDATVTAAIISGQVDALCTPNSLASAIAKQNPSKNLETK 211 Query: 211 YIIQESACNVGLNKGETALLGKVNEVLTAAKKSGELNAIVQKWLNVPLP 259 + I++ +GL KGE AL +NE ++A K+G+L I Q+W+ P+P Sbjct: 212 FAIKDIPYAIGLRKGEPALEKWLNEWISANLKNGKLPGIYQQWVGSPMP 260 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.131 0.359 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 700,456 Number of extensions: 25961 Number of successful extensions: 122 Number of sequences better than 1.0e-08: 16 Number of HSP's gapped: 113 Number of HSP's successfully gapped: 16 Length of query: 267 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 183 Effective length of database: 1,222,130 Effective search space: 223649790 Effective search space used: 223649790 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)