BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0148.p
         (763 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311592|ref|YP_003775684.1| ATP-dependent helicase superfam...  1305   0.0  

>gi|300311592|ref|YP_003775684.1| ATP-dependent helicase superfamily
           II protein [Herbaspirillum seropedicae SmR1]
          Length = 855

 Score = 1305 bits (3377), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 664/753 (88%), Positives = 702/753 (93%), Gaps = 4/753 (0%)

Query: 1   MRALAADTLRALQAPLADLLPHWQAGMRTGDTASGERARQMKSLPQALVTTPESLSLLLS 60
           MRALAADTLRALQ PL +LLPHWQAGMRTGDT S ERARQMK+LPQ LVTTPESLSLLLS
Sbjct: 103 MRALAADTLRALQEPLPELLPHWQAGMRTGDTGSSERARQMKALPQVLVTTPESLSLLLS 162

Query: 61  QADARQRFARLDAVIVDEWHELMGNKRGVQVQLALARLRRWRPGMVVWGLSATLGNLEQS 120
           QADARQRF +LDAVIVDEWHELMGNKRGVQVQLALARLRRWRP MVVWGLSATLGNLEQS
Sbjct: 163 QADARQRFGKLDAVIVDEWHELMGNKRGVQVQLALARLRRWRPQMVVWGLSATLGNLEQS 222

Query: 121 LQALLGPAAAEQGVLVRGEQRKRIVIDTLLPPQPARFAWAGHLGMQMLPAVVQEIEASGS 180
           LQALLGP  A QGVLVRG+QRKRI+IDTLLPPQPARFAWAGHLG+QMLP VV EI++S S
Sbjct: 223 LQALLGPDQAAQGVLVRGQQRKRILIDTLLPPQPARFAWAGHLGLQMLPGVVAEIDSSNS 282

Query: 181 TLVFTNTRSQAELWYQNLLDARPDWAGIIALHHGSLDREVRDWVEHGLRDGRLKAVVCTS 240
           TLVFTNTRSQAELWYQNLL+ARPDWAG+IALHHGSLDREVR+WVE GLRDGRLKAVVCTS
Sbjct: 283 TLVFTNTRSQAELWYQNLLEARPDWAGLIALHHGSLDREVREWVEQGLRDGRLKAVVCTS 342

Query: 241 SLDLGVDFTPVERVLQIGSPRGVARLLQRAGRSGHSPGRSSRATLVPTNSLELVEAIAAQ 300
           SLDLGVDFTPVERVLQIGSPRGVARLLQRAGRSGH+PGR SRATLVPTNSLELVEA AAQ
Sbjct: 343 SLDLGVDFTPVERVLQIGSPRGVARLLQRAGRSGHAPGRVSRATLVPTNSLELVEAAAAQ 402

Query: 301 DAVAAGRVEQRPVPETPLDVLVQHLVTIALGGGFQADALLDEVRQAWSYRDLREDQWQWA 360
           DAVAAG+VEQRPVPE PLDVLVQHLVTIALGGGF+ D L DEVRQAWSYR LREDQWQWA
Sbjct: 403 DAVAAGQVEQRPVPEAPLDVLVQHLVTIALGGGFRPDELFDEVRQAWSYRALREDQWQWA 462

Query: 361 LDFVVRGGRSLTAYPEYHRVRQGEDGVYRVDVPAIARRHRMNIGTIVADASLHVQYMKGG 420
           LDFVVRGG+SLTAYPEY RV+   +G+YRV  PAIA RHR+NIGTIVADASLHVQY+KGG
Sbjct: 463 LDFVVRGGQSLTAYPEYQRVQADAEGIYRVPQPAIATRHRLNIGTIVADASLHVQYLKGG 522

Query: 421 RIGTIEEGFIARLRPGDRFLFGGRVLEFVRVHEMTAWVRRSTAGSGAVPRWQGGRMPLSS 480
           RIGTIEEGFIARLRPGDRFLFGGRVLEFVRVHEMTAWVRRS++GSGAVPRWQGGRMPLSS
Sbjct: 523 RIGTIEEGFIARLRPGDRFLFGGRVLEFVRVHEMTAWVRRSSSGSGAVPRWQGGRMPLSS 582

Query: 481 TLAHAVLDRLQQAEQQHFDGPEMQAVQPLLALQHAWSALPTGERLVVEALKSREGHHLFF 540
           TLAHAVLDRL+QA Q  FDGPEMQAV+PLLALQHAWSALPTG+RLVVEALKSREGHHLFF
Sbjct: 583 TLAHAVLDRLEQAAQARFDGPEMQAVEPLLALQHAWSALPTGQRLVVEALKSREGHHLFF 642

Query: 541 YPFAGRLVHMGLASLLAWRLASTRAATFSIAVNDYGFELLAADQVEMARLAPQEAQDLFS 600
           YPFAGRLVHMGLASLLAWRLA  +AA+FSIAVNDYGFELL A Q  + +LA  +AQ LFS
Sbjct: 643 YPFAGRLVHMGLASLLAWRLARQQAASFSIAVNDYGFELLGAQQAPLEQLAAHQAQTLFS 702

Query: 601 EEHLLEDVLASLNATELSQRRFREIARIAGLVSQGYPGQHKSARQLQASSALFFEVFRKH 660
           +  LL+DVL+SLNATELSQRRFREIARIAGLVSQGYPGQHKSARQLQASSALFFEVFRKH
Sbjct: 703 DHDLLQDVLSSLNATELSQRRFREIARIAGLVSQGYPGQHKSARQLQASSALFFEVFRKH 762

Query: 661 DAGNLLLTQAQREVLEQELELERLRSTLAELRARTMTLVQLERPTPFALPLMVERFREKL 720
           DA NLLLTQAQREVLEQELEL RLRSTLAELRART+TLV+L+RPTPFALPLMVERFREKL
Sbjct: 763 DANNLLLTQAQREVLEQELELARLRSTLAELRARTLTLVRLQRPTPFALPLMVERFREKL 822

Query: 721 STEKLADRVARMLRELEGAAD----KTASREQP 749
           STEKLADRVARMLRELE AAD    KTA+R +P
Sbjct: 823 STEKLADRVARMLRELESAADASAGKTAARRRP 855


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,336,823
Number of extensions: 100781
Number of successful extensions: 383
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 382
Number of HSP's successfully gapped: 1
Length of query: 763
Length of database: 1,619,870
Length adjustment: 93
Effective length of query: 670
Effective length of database: 1,179,515
Effective search space: 790275050
Effective search space used: 790275050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 134 (56.2 bits)