BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0145.p
         (445 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311594|ref|YP_003775686.1| exonuclease of the beta-lactama...   333   2e-92

>gi|300311594|ref|YP_003775686.1| exonuclease of the beta-lactamase
           fold involved in RNA processing protein [Herbaspirillum
           seropedicae SmR1]
          Length = 355

 Score =  333 bits (853), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 164/218 (75%), Positives = 178/218 (81%), Gaps = 2/218 (0%)

Query: 145 AAAGTPRVGHGHYLAAAPGAGILRARLGAEINLQPLPYGETITHNGVRLSLHPAGHVLGS 204
           A A   RVGH HYLAAAPGA ILRARLGA+I L  L YG ++THNGVRLSLHPAGHVLGS
Sbjct: 35  AHADHARVGHAHYLAAAPGADILRARLGADIALDTLAYGASLTHNGVRLSLHPAGHVLGS 94

Query: 205 AQLRMEHEGRIWVASGDYKLEADGTCAPFEPVRCDAFITESTFGMPIYRWQPQREIFEEI 264
           AQLRMEHEG++WVASGDYKLEADGTCAPFEPVRC  FITESTFGMPIYRWQPQ EIFEEI
Sbjct: 95  AQLRMEHEGQVWVASGDYKLEADGTCAPFEPVRCHTFITESTFGMPIYRWQPQAEIFEEI 154

Query: 265 NQWWRSNAAEGRASVLFCYSFGKAQRILHGIDASIGPIVCHGAVEPLNRLYREAGIALPE 324
           N WWR+NAA+GRASVLFCY+FGKAQRILHGIDASIGPI+CHGAV PLNRLYR+ G+ALPE
Sbjct: 155 NAWWRANAAQGRASVLFCYAFGKAQRILHGIDASIGPIICHGAVAPLNRLYRQEGVALPE 214

Query: 325 TLTVGEAEAKPPVQXPRHRRPGRPGYAASATTAMPSPA 362
           T TV   +  P  +    +R     YA S   A PS A
Sbjct: 215 TQTVN--QGSPGSKSDGGKRSPSSAYAGSLVIAPPSAA 250



 Score =  268 bits (684), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 124/162 (76%), Positives = 136/162 (83%)

Query: 1   LHPAGHVLGSAQLRMEHEGRIWVASGDYKLEADGTCAPFEPVRCDAFITESTFGMPIYRW 60
           LHPAGHVLGSAQLRMEHEG++WVASGDYKLEADGTCAPFEPVRC  FITESTFGMPIYRW
Sbjct: 85  LHPAGHVLGSAQLRMEHEGQVWVASGDYKLEADGTCAPFEPVRCHTFITESTFGMPIYRW 144

Query: 61  QPQREIFEEINQWWRSNAAEGRASVLFCYSFGKAQRILHGIDASIGPIVCHGAVEPLNRL 120
           QPQ EIFEEIN WWR+NAA+GRASVLFCY+FGKAQRILHGIDASIGPI+CHGAV PLNRL
Sbjct: 145 QPQAEIFEEINAWWRANAAQGRASVLFCYAFGKAQRILHGIDASIGPIICHGAVAPLNRL 204

Query: 121 YREAGIALPETLTVGEAEAGKRGKAAAGTPRVGHGHYLAAAP 162
           YR+ G+ALPET TV +   G +      +P   +   L  AP
Sbjct: 205 YRQEGVALPETQTVNQGSPGSKSDGGKRSPSSAYAGSLVIAP 246


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,408,673
Number of extensions: 56565
Number of successful extensions: 181
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 2
Length of query: 445
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 357
Effective length of database: 1,203,190
Effective search space: 429538830
Effective search space used: 429538830
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)