BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0137.p (240 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311599|ref|YP_003775691.1| transcription regulator protein... 451 e-128 gi|300311999|ref|YP_003776091.1| GntR family transcription regul... 85 5e-18 gi|300312446|ref|YP_003776538.1| GntR family transcription regul... 79 4e-16 gi|300310738|ref|YP_003774830.1| transcription regulator protein... 73 2e-14 gi|300314040|ref|YP_003778132.1| transcription regulator protein... 72 4e-14 >gi|300311599|ref|YP_003775691.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 243 Score = 451 bits (1160), Expect = e-128, Method: Compositional matrix adjust. Identities = 224/240 (93%), Positives = 232/240 (96%) Query: 1 MSELIALPGAERDGETLSEHVFRKIQSAIVQGEIAPGSKISEPELARTYGISRGPLREAI 60 MSELI+LPG +R+GETLSEHVFRKIQSAIVQGEIAPGSKISEPELARTYGISRGPLREAI Sbjct: 1 MSELISLPGNDREGETLSEHVFRKIQSAIVQGEIAPGSKISEPELARTYGISRGPLREAI 60 Query: 61 HRLEGQNLLVRVPHVGARVVSLTLEGLVELFQIRESLEGMACRLAAQRMSRAELDELRRV 120 HRLEGQNLLVRVPHVGARVVSLTLEGLVELFQIRESLEGMACRLAAQRMSRAELDELRRV Sbjct: 61 HRLEGQNLLVRVPHVGARVVSLTLEGLVELFQIRESLEGMACRLAAQRMSRAELDELRRV 120 Query: 121 LETHEKDEAFQAGRGYYQQEGDYDFHYKIIQASGNQILTRILCGELYQLARMYRIQYSAA 180 L+THEKDEAFQAGRGYYQQEGDYDFHYKIIQASGNQILTRILCGELYQLARMYRIQYSA Sbjct: 121 LDTHEKDEAFQAGRGYYQQEGDYDFHYKIIQASGNQILTRILCGELYQLARMYRIQYSAT 180 Query: 181 PNRPRQAFAEHHRILDALADGDGELADLLMRRHIGASRRNIEHQIAQTGPGSSGQQRDQA 240 P+RPRQAFAEHHRILDALADGDGELADLLMRRHIGASRRNIEHQIAQ G +G++ QA Sbjct: 181 PHRPRQAFAEHHRILDALADGDGELADLLMRRHIGASRRNIEHQIAQAQAGGAGKRAGQA 240 >gi|300311999|ref|YP_003776091.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 222 Score = 85.1 bits (209), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 67/207 (32%), Positives = 101/207 (48%), Gaps = 17/207 (8%) Query: 15 ETLSEHVFRKIQSAIVQGEIAPGSKISEPELARTYGISRGPLREAIHRLEGQNLLVRVPH 74 +T +E + I+ I +++PG + E LA +G+SR P+REA+ +L ++ P Sbjct: 5 KTRAEALRESIEELIAVSKLSPGQHLDETSLAEEFGVSRTPIREALIQLASMGIVEMRPR 64 Query: 75 VGARVVSLTLEGLVELFQIRESLEGMACRLAAQRMSRAELDELRRVLETHEKDEAFQAGR 134 GA V + + L+E+F++ E M RLAA+RM+ AE EL L H +A QA R Sbjct: 65 RGAIVAEIGPQQLIEMFEVMAEFEAMCGRLAARRMTPAEHAEL---LAAH---QACQAAR 118 Query: 135 G-------YYQQEGDYDFHYKIIQASGNQILTRILCGELYQLARMYRIQYSAAPNRPRQA 187 +Y E FH I S N L L++ R YR +R + + Sbjct: 119 DANDPDAYFYLNEA---FHDHIYAGSHNGFLAD-QARALHRRLRPYRRLQLRVRDRLKSS 174 Query: 188 FAEHHRILDALADGDGELADLLMRRHI 214 F EH ++DA+ GD E L+R HI Sbjct: 175 FDEHQAVVDAIISGDAEKTVDLLREHI 201 >gi|300312446|ref|YP_003776538.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 255 Score = 79.0 bits (193), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 71/245 (28%), Positives = 113/245 (46%), Gaps = 26/245 (10%) Query: 12 RDGETLSEHVFRKIQSAIVQGEIAPGSKI-SEPELARTYGISRGPLREAIHRLEGQNLLV 70 R ++LS+ V + + I G + PG K+ +E E+ +T G+SR +REAI RL+ L+ Sbjct: 15 RKPQSLSQEVVAALTAMISNGSLTPGDKLPTESEIMQTQGVSRTVVREAISRLQAAGLVE 74 Query: 71 RVPHVGARVVS--------------LTLEGLVELFQIRESLEGMACRLAAQRMSRAELDE 116 +G V+ T+ L+ L ++R SLE LAA R + +L E Sbjct: 75 TRHGIGTFVLEAKKGGNINIDPATITTMRDLLALLELRISLETETAGLAAARRTEEQLQE 134 Query: 117 LRRVLETHEKDEAFQAGRGYYQQEGDYDFHYKIIQASGNQILTRILCGELYQLARMYRIQ 176 +R L+ A Q G G D+ FH+ I A+GN+ I+ + RI Sbjct: 135 IREALDLFR---ANQQGGGDTVGP-DFRFHFAIANATGNRYFIEIISHLGMGVIPRKRIN 190 Query: 177 YSAAPNRPRQAFA-----EHHRILDALADGDGELADLLMRRHIGASRRNIE--HQIAQTG 229 + + + ++ EH I +A+A GD E A MR H+ SR + Q A++G Sbjct: 191 TAELAHDQQASYLDRVQREHEDIYEAIARGDAEAARAAMRNHLTNSRERLRRAQQEAESG 250 Query: 230 PGSSG 234 S+ Sbjct: 251 SASAA 255 >gi|300310738|ref|YP_003774830.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 234 Score = 72.8 bits (177), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/209 (27%), Positives = 98/209 (46%), Gaps = 5/209 (2%) Query: 14 GETLSEHVFRKIQSAIVQGEIAPGSKISEPELARTYGISRGPLREAIHRLEGQNLLVRVP 73 L+E V+ +++ I + PG +E E+A+ G+SR PLR+A+ RL+ + L Sbjct: 6 ANALAEQVYHRLKDDIFSFRLLPGDNFTETEMAQRQGVSRTPLRDALFRLQREGYLEVGF 65 Query: 74 HVGARVVSLTLEGLVELFQIRESLEGMAC-RLAAQRMSRAELDELRRVLETHEKDEAFQA 132 G +V + + L L+ +R LE A +L +Q + AEL +L + A Sbjct: 66 RRGWKVCPIDFDRLDNLYDLRIVLEMAALDKLCSQPEASAELTQLNAIWLAEPDARQTDA 125 Query: 133 GRGYYQQEGDYDFHYKIIQASGNQILTRILCGELYQLARMYRIQYSAAPNRPRQAFAEHH 192 + E FH ++ A+GN+ +TR+ E+ + R+ R R + EH Sbjct: 126 VKVAQLDEA---FHTNLVAAAGNEEMTRV-HTEVTEKIRIVRRLDFLKKKRIDATYEEHG 181 Query: 193 RILDALADGDGELADLLMRRHIGASRRNI 221 +IL +A A +L+R HI S+ + Sbjct: 182 KILQLIAKRKATEAQILLRAHITQSKLEV 210 >gi|300314040|ref|YP_003778132.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 234 Score = 72.0 bits (175), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 57/204 (27%), Positives = 89/204 (43%), Gaps = 10/204 (4%) Query: 17 LSEHVFRKIQSAIVQGEIAPGSKISEPELARTYGISRGPLREAIHRLEGQNLLVRVPHVG 76 L E V+ I AI G +AP KI++ LA G+SR P+ +A L+ + + G Sbjct: 10 LIEQVYHAILDAICTGALAPNEKITQEGLAEQLGVSRQPILQAFQILKREGFIEDAGRKG 69 Query: 77 ARVVSLTLEGLVELFQIRESLEGMACRLAAQRMSRAELDELRRVLETHEKDEAFQAGRGY 136 V +L + L++L+Q+R L+G+A R A++ D R +AGR Sbjct: 70 VMVTALDPQRLMQLYQVRAVLDGLAARSTAEQWKS---DAALRAAGERAGRALIEAGRAL 126 Query: 137 YQQE-------GDYDFHYKIIQASGNQILTRILCGELYQLARMYRIQYSAAPNRPRQAFA 189 D DFH I ++ GN ++ + + R S+ + Sbjct: 127 ADMRDLSARILADMDFHQFIYRSCGNPMIGQTTALHWQHIRRAMGAILSSEVRSHLAVWE 186 Query: 190 EHHRILDALADGDGELADLLMRRH 213 EH IL A+ +G LAD L R+H Sbjct: 187 EHEAILQAMLEGRPALADKLARQH 210 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.136 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 692,760 Number of extensions: 25295 Number of successful extensions: 123 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 102 Number of HSP's successfully gapped: 19 Length of query: 240 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 157 Effective length of database: 1,226,865 Effective search space: 192617805 Effective search space used: 192617805 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)