BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0136.p (226 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311600|ref|YP_003775692.1| transcription regulator protein... 444 e-126 gi|300313239|ref|YP_003777331.1| transcription regulator protein... 74 1e-14 gi|300309916|ref|YP_003774008.1| transcription regulator protein... 65 4e-12 gi|300310378|ref|YP_003774470.1| transcription regulator protein... 54 8e-09 >gi|300311600|ref|YP_003775692.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 292 Score = 444 bits (1143), Expect = e-126, Method: Compositional matrix adjust. Identities = 216/226 (95%), Positives = 220/226 (97%) Query: 1 VARAGKPVSAKQIAAMVQQPVSTVYRHLASLKKWGLLQEHMNSGTFEPGPTGVQLAWGFD 60 VARAGKPVSAKQIAAMVQQPVSTVYRHLASLKKWGLLQEHMNSGTFEPGPTGVQLAWGFD Sbjct: 67 VARAGKPVSAKQIAAMVQQPVSTVYRHLASLKKWGLLQEHMNSGTFEPGPTGVQLAWGFD 126 Query: 61 QNSNLISQSREEIISLVQRSGESVGLLVPINGQMVCIAMEESDQPLRCSFTKGRAHPLLK 120 QNSNL+SQSREEI SLVQRSGESVGLLV INGQMVCIAMEESDQPLRCSFTKGRAHPLLK Sbjct: 127 QNSNLVSQSREEISSLVQRSGESVGLLVAINGQMVCIAMEESDQPLRCSFTKGRAHPLLK 186 Query: 121 GASAKSLLAFMPRKLQQKLVADQLGDKPEEAAALEAQLDEIRRRGYSISESEVDLGVWGV 180 GASAKSLLAFMPRKLQQKL+ DQLGDKPEE AALE QL+EIRRRGY ISESEVDLGVWGV Sbjct: 187 GASAKSLLAFMPRKLQQKLLTDQLGDKPEELAALETQLEEIRRRGYCISESEVDLGVWGV 246 Query: 181 SVPIMTSNGRLEGTITLMAPALRVGNREQELVRMTVESAQRICNRF 226 SVPIMTSNGRLEGTITLMAPALRVGNREQELVRMT+ESAQRICNRF Sbjct: 247 SVPIMTSNGRLEGTITLMAPALRVGNREQELVRMTLESAQRICNRF 292 >gi|300313239|ref|YP_003777331.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 244 Score = 73.6 bits (179), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 62/224 (27%), Positives = 111/224 (49%), Gaps = 9/224 (4%) Query: 8 VSAKQIAAMVQQPVSTVYRHLASLKKWGLLQEHMNSGTFEPGPTGVQLAWGFDQNSNLIS 67 + + I A + ++ YR++ L GLL + M G + GP ++L Q L+S Sbjct: 21 IDIELICAQLGYTPASAYRYVRELGNAGLLVK-MPRG-YAVGPKVIELDRHMTQFDPLLS 78 Query: 68 QSREEIISLVQRSGESVGLLVPINGQMVCIAMEES-DQPLRCSFTKGRAHPLLKGASAKS 126 SR+ + LV ++G + L+ + G V ++ES R +F +G L A+A+ Sbjct: 79 ASRDIVGDLVAQTGLEL-LISELYGSTVITILQESGSNDARLNFGRGTPMDLFHSATARV 137 Query: 127 LLAFM-PRKLQQKL---VADQLGDKPEEAAALEAQLDEIRRRGYSISESEVDLGVWGVSV 182 +LA++ PR+L++ A++L + +IR+ GY +SE E+D G G++ Sbjct: 138 ILAYLLPRQLRKHFDGASAEELRLVGSNWRDFSKVMLKIRKDGYCVSEGELDAGKTGIAA 197 Query: 183 PIMTSNGRLEGTITLMAPALRVGNREQELVR-MTVESAQRICNR 225 PI R+ G+ITL RV +E + + ++A++I R Sbjct: 198 PIFDEKQRILGSITLAGNTERVNAFNREFLSGLITDAARKITAR 241 >gi|300309916|ref|YP_003774008.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 265 Score = 65.5 bits (158), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 55/208 (26%), Positives = 97/208 (46%), Gaps = 5/208 (2%) Query: 1 VARAGKPVSAKQIAAMVQQPVSTVYRHLASLKKWGLLQEHMNSGTFEPGPTGVQLAWGFD 60 +A P++ Q+AA+ P TVYR LA+L G++ E+ + +E GP + LA Sbjct: 30 IADQDAPLNIAQLAALSGYPRPTVYRILAALMAEGMVVENPRNKQYEVGPRLINLASRAW 89 Query: 61 QNSNLISQSREEIISLVQRSGESVGLLVPINGQMVCIAMEESDQPLRCSFTKGRAHPLLK 120 S++ + + E + L + E+V L VP + MV I ES Q +R G L Sbjct: 90 DRSDIRTTAIESLRQLRDLTRETVHLAVPSDHSMVYIEKLESPQAVRMDSRIGTRVTLYS 149 Query: 121 GASAKSLLAFMPRKLQQKLVADQ-----LGDKPEEAAALEAQLDEIRRRGYSISESEVDL 175 + K+ LA + +++L+ + E AAL A +++ R RGY+ E + Sbjct: 150 SSVGKAYLAGLEEAHRERLMRTLHLQAFTANTHTELAALRADVEDTRARGYAEDREENEA 209 Query: 176 GVWGVSVPIMTSNGRLEGTITLMAPALR 203 ++ I+ ++G +++ P R Sbjct: 210 QIFCYGAAIVGADGVPVACVSVSIPLYR 237 >gi|300310378|ref|YP_003774470.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 282 Score = 54.3 bits (129), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 50/196 (25%), Positives = 97/196 (49%), Gaps = 9/196 (4%) Query: 1 VARAGKPVSAKQIAAMVQQPVSTVYRHLASLKKWGLLQEHMNSGTFEPGPTGVQLAWGFD 60 ++R+ + ++ QI+ + + V+ ++R + +L++ G L ++ + +LA Sbjct: 46 LSRSEQMLTLNQISRQLGRSVNEIFRMVVTLEQRGYLIA--DNDHYRLSLKLFELAHHHQ 103 Query: 61 QNSNLISQSREEIISLVQRSGESVGLLVPINGQMVCIAMEESDQPLRCSF--TKGRAHPL 118 +L+S + + L R+ +S L V G+++ +A + D P R +F G L Sbjct: 104 PIRSLVSTALPHMRELASRAVQSTHLTVYEAGRVIVVA--QVDSPERWAFGLKVGALVSL 161 Query: 119 LKGASAKSLLAFMPRKLQQKLVADQL---GDKPEEAAALEAQLDEIRRRGYSISESEVDL 175 AS LLAF + ++A + G++ E A L Q+++ R+RG+S ES Sbjct: 162 TDTASGHVLLAFRDEAERAAMLAAHVRMDGEQEIETAQLMRQIEDTRKRGHSRMESRQIR 221 Query: 176 GVWGVSVPIMTSNGRL 191 GV +S P+M +N R+ Sbjct: 222 GVVNLSYPVMGANNRM 237 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.131 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 595,581 Number of extensions: 20734 Number of successful extensions: 85 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 88 Number of HSP's successfully gapped: 7 Length of query: 226 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 144 Effective length of database: 1,231,600 Effective search space: 177350400 Effective search space used: 177350400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)