BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0133.p (257 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311603|ref|YP_003775695.1| glutamine ABC transporter ATPas... 414 e-117 gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPa... 276 1e-75 gi|300309411|ref|YP_003773503.1| glutamine ABC transporter ATPas... 273 7e-75 gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPa... 265 3e-72 gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPa... 260 8e-71 >gi|300311603|ref|YP_003775695.1| glutamine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 414 bits (1063), Expect = e-117, Method: Compositional matrix adjust. Identities = 210/253 (83%), Positives = 232/253 (91%) Query: 1 MEHSVVDIKGLRKSFGSHLVLKDIDFSVSPSQVVVIIGPSGSGKSTLLRCLNGLETAEGG 60 M +V++ GLRKSFG+H+VLKD+D SV+PSQVVV+IGPSGSGKST LRCLNGLE AEGG Sbjct: 1 MTEPIVEVSGLRKSFGAHVVLKDLDLSVAPSQVVVVIGPSGSGKSTFLRCLNGLEKAEGG 60 Query: 61 TVVVGGHTVVEGGRMMPEAMLDALRAEVGMVFQSFNLFPHLNVLDNITLAPTCLRGVPRK 120 TV V G VVEGGRMMPEAMLD LRAEVGMVFQSFNLFPHL VLDNITLAPTCLRG+ RK Sbjct: 61 TVKVCGRPVVEGGRMMPEAMLDLLRAEVGMVFQSFNLFPHLTVLDNITLAPTCLRGMSRK 120 Query: 121 AAQEQGLRLLRKVGLEHKAKEYPGTLSGGQKQRVAIARALAMEPKVMLFDEPTSALDPEL 180 AAQ+Q L+LL KVGL HKAK YPGTLSGGQKQRVAIARALAMEP+VMLFDEPTSALDPEL Sbjct: 121 AAQQQALQLLEKVGLAHKAKAYPGTLSGGQKQRVAIARALAMEPQVMLFDEPTSALDPEL 180 Query: 181 VGEVLQVMQDLASDGMTMLIVTHEMGFAREVADVVVVMDHGSIVESGPPSEIFTSPREAR 240 VGEVLQV++ LA++GMTM+IVTHEMGFAREVADVVVVMDHGSIVE+GPP IFT+P++AR Sbjct: 181 VGEVLQVIRALAAEGMTMIIVTHEMGFAREVADVVVVMDHGSIVEAGPPGAIFTAPQQAR 240 Query: 241 TRSFLQTMLAREV 253 TRSFLQTMLAR+V Sbjct: 241 TRSFLQTMLARQV 253 >gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 276 bits (706), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 136/247 (55%), Positives = 180/247 (72%), Gaps = 5/247 (2%) Query: 5 VVDIKGLRKSFGSHLVLKDIDFSVSPSQVVVIIGPSGSGKSTLLRCLNGLETAEGGTVVV 64 ++++K + K FG H VLKD+ SV+ +VV +IGPSGSGKST+LRC+NGLE+ E G +++ Sbjct: 1 MIEVKRISKCFGRHEVLKDVSLSVAQGEVVCLIGPSGSGKSTVLRCINGLESYERGDILI 60 Query: 65 GGHTVVEGGRMMPEAMLDALRAEVGMVFQSFNLFPHLNVLDNITLAPTCLRGVPRKAAQE 124 G V G P+ + LR VGMVFQ FNLFPH VL+N+T P + G+ R A+ Sbjct: 61 DGQRVDRDG---PD--IHRLRTRVGMVFQRFNLFPHRTVLENVTEGPIYVNGLARAQARS 115 Query: 125 QGLRLLRKVGLEHKAKEYPGTLSGGQKQRVAIARALAMEPKVMLFDEPTSALDPELVGEV 184 + + LL KVGL + YP LSGGQ+QRVAIAR+LAM+P+ +LFDEPTSALDPELVGEV Sbjct: 116 EAMSLLDKVGLAARCDAYPAQLSGGQQQRVAIARSLAMQPEAILFDEPTSALDPELVGEV 175 Query: 185 LQVMQDLASDGMTMLIVTHEMGFAREVADVVVVMDHGSIVESGPPSEIFTSPREARTRSF 244 L VM+ LA+DGMTM++VTHEMGFAREVAD V + GSIVESG +++ P+ ART+ F Sbjct: 176 LAVMRTLAADGMTMIVVTHEMGFAREVADRVCFLHSGSIVESGAAAQVLAEPQHARTQDF 235 Query: 245 LQTMLAR 251 L+ ++ + Sbjct: 236 LRRVIGK 242 >gi|300309411|ref|YP_003773503.1| glutamine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 240 Score = 273 bits (699), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 136/245 (55%), Positives = 176/245 (71%), Gaps = 5/245 (2%) Query: 5 VVDIKGLRKSFGSHLVLKDIDFSVSPSQVVVIIGPSGSGKSTLLRCLNGLETAEGGTVVV 64 ++ + L+K FG +L+ ID + +VV +IGPSGSGKST LRCLNGLE G + + Sbjct: 1 MIKVNQLQKRFGQAHILRGIDCEIRAREVVCVIGPSGSGKSTFLRCLNGLEEVSDGDIFI 60 Query: 65 GGHTVVEGGRMMPEAMLDALRAEVGMVFQSFNLFPHLNVLDNITLAPTCLRGVPRKAAQE 124 G + + P+ L+ALRAE+GMVFQ FNLFPH+ VL+N+ +AP ++ + R+ A Sbjct: 61 EGVKLND-----PKVNLNALRAELGMVFQRFNLFPHMTVLENLIMAPMQVKKLSRREAVL 115 Query: 125 QGLRLLRKVGLEHKAKEYPGTLSGGQKQRVAIARALAMEPKVMLFDEPTSALDPELVGEV 184 +LL+KVGL K +P LSGGQ+QRVAIARALAMEPKVMLFDEPTSALDPELVGEV Sbjct: 116 VAEKLLQKVGLLDKIDAFPNQLSGGQQQRVAIARALAMEPKVMLFDEPTSALDPELVGEV 175 Query: 185 LQVMQDLASDGMTMLIVTHEMGFAREVADVVVVMDHGSIVESGPPSEIFTSPREARTRSF 244 L VM+ LA +GMTM++VTHEMGFAREV+D V+ +D G I+E GPP ++ P RTR F Sbjct: 176 LTVMKQLAEEGMTMVVVTHEMGFAREVSDRVLFIDQGVIMEEGPPQQVLGDPHHERTRDF 235 Query: 245 LQTML 249 L+ +L Sbjct: 236 LRKVL 240 >gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 265 bits (677), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 131/241 (54%), Positives = 168/241 (69%), Gaps = 5/241 (2%) Query: 5 VVDIKGLRKSFGSHLVLKDIDFSVSPSQVVVIIGPSGSGKSTLLRCLNGLETAEGGTVVV 64 +V+I + K FGS+ VL I SV QVV IIG SGSGKST+LRC+NGLET +GG++ V Sbjct: 3 IVEINNITKRFGSNQVLNGISLSVERGQVVAIIGRSGSGKSTMLRCINGLETIDGGSITV 62 Query: 65 GGHTVVEGGRMMPEAMLDALRAEVGMVFQSFNLFPHLNVLDNITLAPTCLRGVPRKAAQE 124 GH + + E LR +VGMVFQ +NLFPHL V +NI L+P ++ + A+E Sbjct: 63 AGHKLTHKHEHLIE-----LRKDVGMVFQHYNLFPHLTVEENIMLSPRIVKKTATETARE 117 Query: 125 QGLRLLRKVGLEHKAKEYPGTLSGGQKQRVAIARALAMEPKVMLFDEPTSALDPELVGEV 184 +++L++VGL+HK YP LSGGQ+QRVAIAR+LAMEP+VMLFDE TSALDPEL EV Sbjct: 118 TAIKVLKQVGLDHKRDAYPEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPELTAEV 177 Query: 185 LQVMQDLASDGMTMLIVTHEMGFAREVADVVVVMDHGSIVESGPPSEIFTSPREARTRSF 244 L+VM++LA GMTML+VTHEM FAR VAD+ V M G + E+ P E F P+ R F Sbjct: 178 LKVMEELARGGMTMLLVTHEMEFARRVADLTVFMHQGKVWEARPSEEFFADPQTPEARQF 237 Query: 245 L 245 + Sbjct: 238 I 238 >gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 260 bits (664), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 133/246 (54%), Positives = 172/246 (69%), Gaps = 4/246 (1%) Query: 4 SVVDIKGLRKSFGSHLVLKDIDFSVSPSQVVVIIGPSGSGKSTLLRCLNGLETAEGGTVV 63 ++V IK L KSFGS+ VL + V Q+V IIG SGSGKSTLLRCLNGLE + G + Sbjct: 3 AIVKIKDLHKSFGSNKVLNGVSLDVQKGQMVAIIGKSGSGKSTLLRCLNGLEKVDAGDIQ 62 Query: 64 VGGHTVVEGGRMMPEAMLDALRAEVGMVFQSFNLFPHLNVLDNITLAPTCLRGVPRKAAQ 123 V GH + ++ L LR +VG+VFQS+NLFPHL V NITLA T ++ + + A+ Sbjct: 63 VCGHDIHHPDKLN----LRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTEQAK 118 Query: 124 EQGLRLLRKVGLEHKAKEYPGTLSGGQKQRVAIARALAMEPKVMLFDEPTSALDPELVGE 183 ++L+ VGLE+K YP LSGGQ QRVAIAR+LAM P++MLFDE TSALDPEL E Sbjct: 119 TIAHKVLQLVGLENKKDAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTAE 178 Query: 184 VLQVMQDLASDGMTMLIVTHEMGFAREVADVVVVMDHGSIVESGPPSEIFTSPREARTRS 243 VL+VM+DLA GMTM++VTHEM FAR++ADV+V M G + E GPP E+F+ P+ A + Sbjct: 179 VLKVMEDLARGGMTMVLVTHEMAFARKLADVLVFMHQGQVWEIGPPDELFSHPKTAELQK 238 Query: 244 FLQTML 249 F+ + L Sbjct: 239 FVSSDL 244 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.136 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 712,883 Number of extensions: 26375 Number of successful extensions: 573 Number of sequences better than 1.0e-08: 132 Number of HSP's gapped: 311 Number of HSP's successfully gapped: 150 Length of query: 257 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 174 Effective length of database: 1,226,865 Effective search space: 213474510 Effective search space used: 213474510 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)