BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0122.p (412 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311611|ref|YP_003775703.1| transcription regulator DNA-bin... 549 e-157 gi|300309618|ref|YP_003773710.1| LacI family transcription regul... 148 9e-37 gi|300309932|ref|YP_003774024.1| transcription regulator protein... 128 1e-30 gi|300311924|ref|YP_003776016.1| transcription repressor for pur... 122 4e-29 gi|300310488|ref|YP_003774580.1| LacI family transcription regul... 122 7e-29 >gi|300311611|ref|YP_003775703.1| transcription regulator DNA-binding repressor protein [Herbaspirillum seropedicae SmR1] Length = 337 Score = 549 bits (1414), Expect = e-157, Method: Compositional matrix adjust. Identities = 275/290 (94%), Positives = 281/290 (96%) Query: 1 MATIKDVARLAGVSYTTVSHVLNQTRPVSSDARERVLAAVKELDYVPSALARSLRSKVTG 60 MATIKDVARLAGVSYTTVSHVLNQTRPVSSDARERVLAAVKELDYVPSALARSLRSKVTG Sbjct: 1 MATIKDVARLAGVSYTTVSHVLNQTRPVSSDARERVLAAVKELDYVPSALARSLRSKVTG 60 Query: 61 SIGLIIPNNTNPYFSELARGIEDHCYGAGYSVILCNSDDDPDKQRDYLQVLQTKRCDGLI 120 SIGLIIPNNTNPYFSELARGIEDHCYGAGYSVILCNSDDDPDKQRDYLQVLQTK CDGLI Sbjct: 61 SIGLIIPNNTNPYFSELARGIEDHCYGAGYSVILCNSDDDPDKQRDYLQVLQTKHCDGLI 120 Query: 121 IATLNQADLNPAGRLDIPTVLLDRAPKELDIDLVSTDNALGGSLAARHLLDLQRRHVACI 180 IATLNQADLNPAG+LDIPTVLLDRAPKELDIDLVSTDNA+GGSLAARHLLDL+R VACI Sbjct: 121 IATLNQADLNPAGKLDIPTVLLDRAPKELDIDLVSTDNAVGGSLAARHLLDLRRCRVACI 180 Query: 181 AGPDGLELSDERVQGFRQTLQAGGLALADGDLLHADFSGIGGYQAAMQLLQGRAQGARPD 240 AGPDGLELSDERV+GFRQTL+ GGLALAD DLLHADFSGIGGYQAAM+LLQGR RPD Sbjct: 181 AGPDGLELSDERVRGFRQTLEQGGLALADSDLLHADFSGIGGYQAAMRLLQGRPADQRPD 240 Query: 241 AIFCCNDMMAIGVLRAAGELQIEVPGELSVVGFDDIELAQFVHPPLTTVA 290 AIFCCNDMMAIGVLRAAGELQIEVPGELSVVGFDDIELAQFVHPPLTTVA Sbjct: 241 AIFCCNDMMAIGVLRAAGELQIEVPGELSVVGFDDIELAQFVHPPLTTVA 290 >gi|300309618|ref|YP_003773710.1| LacI family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 338 Score = 148 bits (373), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 109/326 (33%), Positives = 162/326 (49%), Gaps = 13/326 (3%) Query: 1 MATIKDVARLAGVSYTTVSHVLNQTRPVSSDARERVLAAVKELDYVPSALARSLRSKVTG 60 M T+ +VARLAGV+ TVS+VL Q V R+RVL AV +L Y P AR+L Sbjct: 1 MTTLSEVARLAGVTSATVSNVLRQRGKVGEQTRQRVLDAVAQLGYRPHLTARALAEGRAP 60 Query: 61 SIGLIIPNNTNPYFSELARGIEDHCYGAGYSVILCNSDDDPDKQRDYLQVLQTKRCDGLI 120 ++ L++ + NP++ E A E G +I+CN++DDPD R YL + DG++ Sbjct: 61 TLALVVSSIANPFYPEFALAAERAARDHGRFLIVCNTNDDPDIGRAYLDQIAGTLSDGVL 120 Query: 121 I--ATLNQADLNPAGRLDIPTVLLDR----APKELDIDLVSTDNALGGSLAARHLLDLQR 174 I A L +L + P VL AP EL ++ D G++AARHLL L Sbjct: 121 IMNANLPMDELRKTEQRGAPVVLCMWEKPDAPPELPC--IAVDFFEAGAIAARHLLGLGH 178 Query: 175 RHVACIAGPDGLELSDERVQGFRQTLQAGGLALADGDLLHADFSGIGGYQAAMQLLQGRA 234 + A + G + ER +GF + G + + + GY+A M+LL+ Sbjct: 179 QCFAALVGSKKSGIHAERYRGFASACKEAGHPHPTQRTRYINDTVESGYRATMELLREHP 238 Query: 235 QGARPDAIFCCNDMMAIGVLRAAGELQIEVPGELSVVGFDDIELAQFVHPPLTTVAXRDP 294 Q AIF ND+ A+G + A ++ + VP ++SV G DI+ A+ P LTTVA P Sbjct: 239 QV---TAIFASNDLPALGAMNAIADMGMNVPRDVSVTGITDIQWARVSRPALTTVAV--P 293 Query: 295 YGAPRDGGTATPAARLDRPAPEPDLN 320 A A ++R +P P ++ Sbjct: 294 TEAAARMSIELLLALIERRSPSPVMH 319 >gi|300309932|ref|YP_003774024.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 358 Score = 128 bits (321), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 91/300 (30%), Positives = 158/300 (52%), Gaps = 21/300 (7%) Query: 3 TIKDVARLAGVSYTTVSHVLNQTRPVSSDARERVLAAVKELDYVPSALARSLRSKVTGSI 62 +IK VA LAGVS TVS +LN+ VS++ E++ ++ EL + P+ R+LR+ + ++ Sbjct: 4 SIKQVAHLAGVSIATVSRLLNKPGSVSAETAEKIHRSIAELGFRPNFTGRNLRAGNSRTV 63 Query: 63 GLIIPNNTNPYFSELARGIEDHCYGAGYSVILCNSDDDPDKQRDYLQVLQTKRCDGLIIA 122 G+++P +N F++ +GIE YSV+ ++ P+++ +++L R DG+I+ Sbjct: 64 GVVVPTLSNTVFAQCLQGIELAARALDYSVMFTTTEYLPEEETAAVELLLGHRVDGMILT 123 Query: 123 TLN---QADLNPAGRLDIPTVLLDRAPKELDID--------LVSTDNALGGSLAARHLLD 171 + A L+ R IP VL A +L D VS DN A HL+ Sbjct: 124 VADASANATLDLLERERIPFVL---AYNQLGTDQTAAPARASVSVDNRAAACDAVAHLIG 180 Query: 172 LQRRHVACIAG-PDGLELSDERVQGFRQTLQAGGLA-LADGDLLHADFSGIGGYQAAMQL 229 L R + ++G + + + +R G+ ++A GLA +A ++ + YQ Q+ Sbjct: 181 LGHRRIQMLSGRFNASDRAMQRYYGYLDAMRAAGLAPMAVIEVERHTLTAAADYQ---QM 237 Query: 230 LQGRAQGARPDAIFCCNDMMAIGVLRAAGELQIEVPGELSVVGFDDIELAQFVHPPLTTV 289 + Q RP A+FC ND++A+ +R L ++VP ++SV+GFD I + + P L +V Sbjct: 238 MADPRQ--RPTALFCSNDLLAMSAMRDLRALGMKVPNDISVMGFDGIPVGALMEPVLASV 295 >gi|300311924|ref|YP_003776016.1| transcription repressor for pur regulon regulator protein [Herbaspirillum seropedicae SmR1] Length = 369 Score = 122 bits (307), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 107/316 (33%), Positives = 159/316 (50%), Gaps = 38/316 (12%) Query: 3 TIKDVARLAGVSYTTVSHVLNQTRPVSSDARERVLAAVKELDYVPSALARSLRSKVTGSI 62 TIKDVA+ AGVS+ TVS VLN V+ RE V AA+ L+++P+ ARSLR+ T ++ Sbjct: 5 TIKDVAKAAGVSFQTVSLVLNHPEKVAPRTRELVQAAIDALNFIPNVAARSLRNISTRTL 64 Query: 63 GLIIPNNTNPYFSELARGIEDHCYG------------AGYSVILCNSDDDPDKQRDYLQ- 109 ++ N ++ + E + +D Y AGY+++ N + + Y++ Sbjct: 65 ACVMFNGSS--YDERSERTQDTHYHNVVQTLTRAADRAGYTLLQRNLMREDEASLVYVRD 122 Query: 110 VLQTKRCDGLIIATLNQADLNPA----GRLDIPTVLLDRAPKELDIDLVSTDNALGGSLA 165 + R DG+ IA +N+A NP RL P V+ A +V +D G ++ Sbjct: 123 LFLAGRIDGM-IAMVNRAG-NPVVSELHRLGYPCVVYGMADPACH-HVVQSDRQAGLAV- 178 Query: 166 ARHLLDLQRRHVACIAGP-----------DGLELSDE-RVQGFRQTLQAGGLALADGDLL 213 HL R +A + GP G+ S E R G+ L+ GL ++ Sbjct: 179 VEHLYRSGCRRIALVTGPQKDHQPGKSREQGVPTSSEARYFGYLDGLEKCGLTPRPEWVV 238 Query: 214 HADFSGIGGYQAAMQLLQGRAQGARPDAIFCCNDMMAIGVLRAAGELQIEVPGELSVVGF 273 D+S GY+AA QL Q RPDAIF ND MA+G L+A +L ++VP E+SVVGF Sbjct: 239 TGDWSLESGYRAAAQLCH---QAERPDAIFLGNDRMALGALKALYDLGVKVPHEISVVGF 295 Query: 274 DDIELAQFVHPPLTTV 289 D++ F P LT+V Sbjct: 296 DNMRYDDFSIPSLTSV 311 >gi|300310488|ref|YP_003774580.1| LacI family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 365 Score = 122 bits (305), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 96/297 (32%), Positives = 153/297 (51%), Gaps = 19/297 (6%) Query: 3 TIKDVARLAGVSYTTVSHVLNQTRPVSSDARERVLAAVKELDYVPSALARSLRSKVTGSI 62 T++DVA+LAGV+ T S LN VS ++V AV++ YVP+ LA L S + + Sbjct: 37 TLRDVAQLAGVAPITASRALNTPSAVSPKVLQKVREAVEKTGYVPNLLAGGLASNKSRLV 96 Query: 63 GLIIPNNTNPYFSELARGIEDHCYGAGYSVILCNSDDDPDKQRDYLQVLQTKRCDGLIIA 122 +++P P F E+ + + AGY V+L S + ++ L+ + +R DG+++ Sbjct: 97 AVVVPTVIGPVFQEIVHTLTETLAAAGYQVMLGQSGYENSREDALLEAIIGRRPDGVVLT 156 Query: 123 TLNQADLNPAGRL---DIPTV-LLDRAPKELDIDLVSTDNALGGSLAARHLLDLQRRHVA 178 + ++ RL IP V D P +D+ + + A+G + AR+L R+ VA Sbjct: 157 GIMRSA-EARKRLLASGIPVVETWDLTPTPIDMLVGFSHEAIGREV-ARYLHQRGRKKVA 214 Query: 179 CIAGPDGLELSDERVQGFRQTLQAGGLALADGDL----LHADFSGIGGYQAAMQLLQGRA 234 + G D E S R+ F Q A G+ L + A + G Q +LLQ Sbjct: 215 VVGGRD--ERSQRRMNAFAQECVALGMHEGRAPLPMHHVTAPTTLGQGRQGLAELLQ--- 269 Query: 235 QGARP--DAIFCCNDMMAIGVLRAAGELQIEVPGELSVVGFDDIELAQFVHPPLTTV 289 A+P DAIFC +D++A+GV+ A I +P +L+VVGF D+E ++ + P LTTV Sbjct: 270 --AQPDLDAIFCSSDLLALGVMIEAQSRGIAIPEQLAVVGFGDLEFSRDLQPRLTTV 324 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.139 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,285,032 Number of extensions: 54089 Number of successful extensions: 173 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 163 Number of HSP's successfully gapped: 8 Length of query: 412 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 324 Effective length of database: 1,203,190 Effective search space: 389833560 Effective search space used: 389833560 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)