BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0121.p
         (229 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311612|ref|YP_003775704.1| sugar kinase [Herbaspirillum se...   418   e-118
gi|300310353|ref|YP_003774445.1| ribokinase [Herbaspirillum sero...   105   3e-24
gi|300311076|ref|YP_003775168.1| sugar kinase,ribokinase family ...    55   4e-09

>gi|300311612|ref|YP_003775704.1| sugar kinase [Herbaspirillum
           seropedicae SmR1]
          Length = 299

 Score =  418 bits (1075), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 222/229 (96%), Positives = 226/229 (98%)

Query: 1   MRQSITACGIDDRYIDEVAGEATGIASIMVDANAQNSIVIAAGANGRLDVERIERARPVI 60
           MRQSITACGIDDRYIDEVAGEATGIASIMVDANAQNSIVIAAGANGRLDVERIERAR +I
Sbjct: 71  MRQSITACGIDDRYIDEVAGEATGIASIMVDANAQNSIVIAAGANGRLDVERIERARALI 130

Query: 61  EQASIVLLQLEVPMDTVIHSIELAHALGKTVVLNPAPAQALPRALLQKIDYLILNEIEAA 120
           EQASIVLLQLEVPM TVIHSIELAHALGKTVVLNPAPAQALPRALLQKIDYLILNEIEAA
Sbjct: 131 EQASIVLLQLEVPMATVIHSIELAHALGKTVVLNPAPAQALPRALLQKIDYLILNEIEAA 190

Query: 121 MLAEEQSEDIPLLAQKLHGLGARNVVVTLGEKGVYGSFADGQQRHLPARKVQAVDTTAAG 180
           MLAEEQSEDIP+LA+KLH LGARNVVVTLGEKGVYGSFADGQQRHLPARKVQAVDTTAAG
Sbjct: 191 MLAEEQSEDIPMLARKLHDLGARNVVVTLGEKGVYGSFADGQQRHLPARKVQAVDTTAAG 250

Query: 181 DTFIGGFIGAIAQGRDQFDAIAYAQAAAALSVTRVGAQTSIPTRDEVVL 229
           DTFIGGFIGAIAQGRDQF+AIAYAQAAAALSVTRVGAQTSIPTRDEVVL
Sbjct: 251 DTFIGGFIGAIAQGRDQFEAIAYAQAAAALSVTRVGAQTSIPTRDEVVL 299


>gi|300310353|ref|YP_003774445.1| ribokinase [Herbaspirillum
           seropedicae SmR1]
          Length = 319

 Score =  105 bits (262), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 113/221 (51%), Gaps = 9/221 (4%)

Query: 13  RYIDEVAGEATGIASIMV-DANAQNSIVIAAGANGRLDVERIERARPVIEQASIVLLQLE 71
           R ID   G  TG A I V DA+  N+I++  GA  +L  + +ER R  IE A + + QLE
Sbjct: 90  RVID---GAPTGAAFIYVNDASGDNAIIVVPGAASQLSEQDVERERQAIEAAKVFVTQLE 146

Query: 72  VPMDTVIHSIELAHALGKTVVLNPAPAQALPRALLQKIDYLILNEIEAAMLAE---EQSE 128
            P +  +  +++A A G T V NPAPA A P  +    D++  NE EAA+L        +
Sbjct: 147 QPPEAALAGLQIARAAGTTTVFNPAPALAFPAQVYGLCDFITPNEHEAALLTGIEIHHID 206

Query: 129 DIPLLAQKLHGLGARNVVVTLGEKGVYGSFADGQQRHLPARKV-QAVDTTAAGDTFIGGF 187
           D    A  L   G    ++TLG +G     +  Q  HLPA      V+T  AGD F G F
Sbjct: 207 DARRAADVLLERGVGCALITLGAQGSL-LHSRSQSLHLPALCAGTVVETAGAGDAFNGAF 265

Query: 188 IGAIAQGRDQFDAIAYAQAAAALSVTRVGAQTSIPTRDEVV 228
              +A+G    +A   A A AA+SVTR G   S+P+R E +
Sbjct: 266 AAGLAEGMSAEEAARLATAVAAISVTRPGTAPSMPSRQEAL 306


>gi|300311076|ref|YP_003775168.1| sugar kinase,ribokinase family
           protein [Herbaspirillum seropedicae SmR1]
          Length = 308

 Score = 55.5 bits (132), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/100 (40%), Positives = 54/100 (54%), Gaps = 1/100 (1%)

Query: 128 EDIPLLAQKLHGLGARNVVVTLGEKGVYGSFADGQQRHLPARKVQAVDTTAAGDTFIGGF 187
           ED   +  +L   G + V   LG++G Y + +D Q+R +    V ++D T AGD F G F
Sbjct: 201 EDRDAIVDRLLSYGVKLVAFKLGKEGCYVATSD-QRRMVAPYPVDSLDATGAGDCFGGAF 259

Query: 188 IGAIAQGRDQFDAIAYAQAAAALSVTRVGAQTSIPTRDEV 227
           +  +  GRD F A  YA  AAALS T  GA   IP R +V
Sbjct: 260 MAELMAGRDAFAAARYANVAAALSTTGYGAVEPIPRRAQV 299


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 529,674
Number of extensions: 17391
Number of successful extensions: 80
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 3
Length of query: 229
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 147
Effective length of database: 1,231,600
Effective search space: 181045200
Effective search space used: 181045200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)