BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0119.p (487 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 629 0.0 gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis pro... 276 3e-75 gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis tra... 266 2e-72 gi|300309376|ref|YP_003773468.1| methyl-accepting chemotaxis pro... 239 3e-64 gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis pro... 236 3e-63 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 629 bits (1623), Expect = 0.0, Method: Compositional matrix adjust. Identities = 311/374 (83%), Positives = 342/374 (91%), Gaps = 2/374 (0%) Query: 1 MFAYFGNLKVGARLAIVFAFIVALLAVVSITAFIKINNINRAIDQIVNDRYLKVRWAFDL 60 MFAYF NLKV RLA VFAFIVALLAVVS+TAFIKINNINRAIDQIVNDRYLKVRWAFDL Sbjct: 1 MFAYFKNLKVAVRLAAVFAFIVALLAVVSVTAFIKINNINRAIDQIVNDRYLKVRWAFDL 60 Query: 61 RDGVNEQIKYLRGMAIDIGNPAANEKRIGQLDVAVRASKEALDKITARQVTAVGQKKAKA 120 RDGVNEQIKYLRG+AIDI N ANEKR QL+VAV+ +KEALDKITARQVTAVGQKKAKA Sbjct: 61 RDGVNEQIKYLRGIAIDIENRPANEKRFAQLEVAVKQTKEALDKITARQVTAVGQKKAKA 120 Query: 121 LDDARQLFETSRTQFLALIRAGQGDAADEFVLRKITDSQNAYLSLATAFADSQDSQLRAE 180 LD+AR F+ S+ FLAL++AG +ADE+VLRKITD+QN YL+LA AFADSQD+QL+AE Sbjct: 121 LDEARIAFDASKADFLALVKAGNSTSADEYVLRKITDTQNNYLALARAFADSQDAQLQAE 180 Query: 181 GAQAVADGALAIQVTLACSAVAVLAAILLGYLMVRSIVKPLNEAVRVAENVAAGDLTTRI 240 GA+AVADGA+AI+VTLACS AVLAAI+LGYLM RSIVKPL EAVRVAENVAAGDLTTRI Sbjct: 181 GAKAVADGAMAIEVTLACSMAAVLAAIILGYLMARSIVKPLTEAVRVAENVAAGDLTTRI 240 Query: 241 EPHSKDETGQLMAALRKMNDNLVDIVSGVRRSTDSIATASGEIASGNMDLSSRT--XAGS 298 EPHS+DETGQLM ALRKMNDNL++IVSGVRR T+SI TASGEIASGN+DLS+RT AGS Sbjct: 241 EPHSRDETGQLMQALRKMNDNLIEIVSGVRRGTESITTASGEIASGNLDLSARTEQQAGS 300 Query: 299 LEETASAMEEMTSTVRQNADNARQANQLAATASEVALQGGEIVGRVVTTMEEINQSSRKI 358 LEETASAMEEMTSTVRQNADNARQANQ+A +ASE+ALQGG+IVGRVV TM+EINQSSRKI Sbjct: 301 LEETASAMEEMTSTVRQNADNARQANQMAVSASEIALQGGQIVGRVVHTMDEINQSSRKI 360 Query: 359 VDIIGVIDGIAFQT 372 VDIIGVIDGIAFQT Sbjct: 361 VDIIGVIDGIAFQT 374 >gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 576 Score = 276 bits (705), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 175/370 (47%), Positives = 227/370 (61%), Gaps = 3/370 (0%) Query: 5 FGNLKVGARLAIVFAFIVALLAVVSITAFIKINNINRAIDQIVNDRYLKVRWAFDLRDGV 64 ++K+ RL FA ++ ++ V++ + ++ A D+IVNDRY+KV + D V Sbjct: 4 ISDMKISVRLGACFAALIVVMCVIAGVGVKNLLMVSDATDEIVNDRYVKVALGTQITDKV 63 Query: 65 NEQIKYLRGMAIDIGNPAANEKRIGQLDVAVRASKEALDKITARQVTAVGQKKAKALDDA 124 N + LR AI NP +K + ++D E L ++ R T G + AL A Sbjct: 64 NTGARSLRN-AIMARNPEEQKKYLDRMDTYTSQVSEHLAEMEKRTNTPRGSELLAALKQA 122 Query: 125 RQLFETSRTQFLALIRAGQGDAADEFVLRKITDSQNAYLSLATAFADSQDSQLRAEGAQA 184 R + R + + LI + D A + K Q+ Y + Q S + +A Sbjct: 123 RADYSKERIKVVDLIHQQKRDEATAHLFDKTIPVQDKYFAAVKEMVSFQSSLMDKSAERA 182 Query: 185 VADGALAIQVTLACSAVAVLAAILLGYLMVRSIVKPLNEAVRVAENVAAGDLTTRIEPHS 244 A + AI + L S VAVL + L L+ RSI +PLNEAV+VA VAAGDLT +IE S Sbjct: 183 SAASSSAINIMLVLSGVAVLLSALCAMLITRSITRPLNEAVQVATAVAAGDLTVQIEATS 242 Query: 245 KDETGQLMAALRKMNDNLVDIVSGVRRSTDSIATASGEIASGNMDLSSRT--XAGSLEET 302 KDETG L+ AL+ MNDNL IV+ VR TD+I TAS EIA+GN+DLSSRT AG+LEET Sbjct: 243 KDETGALLGALKSMNDNLHRIVAEVRAGTDTINTASREIATGNLDLSSRTEQQAGALEET 302 Query: 303 ASAMEEMTSTVRQNADNARQANQLAATASEVALQGGEIVGRVVTTMEEINQSSRKIVDII 362 ASAMEE+TSTVRQNADNARQAN LA TAS+VA+QGG +VG VV TM +IN +SRKIVDII Sbjct: 303 ASAMEELTSTVRQNADNARQANTLAETASQVAIQGGSVVGEVVQTMGQINDASRKIVDII 362 Query: 363 GVIDGIAFQT 372 VIDGIAFQT Sbjct: 363 SVIDGIAFQT 372 >gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 597 Score = 266 bits (681), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 172/381 (45%), Positives = 241/381 (63%), Gaps = 29/381 (7%) Query: 7 NLKVGARLAIVFAFIVALLAVVSITAFIKINNINRAIDQIVNDRYLKVRWAFDLRDGVNE 66 ++K+ RLA+ FA ++ ++ +++ +++I+++ IV DRY K+ A ++RD VN Sbjct: 5 DIKISVRLAVCFAVLIGVMCLITGVGMKSLSSISKSSALIVEDRYEKIALAVEIRDNVNG 64 Query: 67 QIKYLRGMAID---------IGNPAANEKRIGQLDVAVRASKEALDKITARQVTAVGQKK 117 + LR + + AAN + + EAL K+ TA G++ Sbjct: 65 AARNLRNALLGRNLEEATRYLDRSAANSAK----------TTEALGKMEKILSTARGREL 114 Query: 118 AKALDDARQLFETSRTQFLALIRAGQGDAADEFVLRKITDSQNAYLSLATAFADSQDSQL 177 +++ +AR + T R + LI+ + + A E + ++ +Q+ Y + F Q S + Sbjct: 115 FQSIQEARSAYNTPRDKLRELIKQQKKEEAVELLFTQVIPAQDKYFQVLDQFVAFQKSLM 174 Query: 178 RAEGAQAVADG----ALAIQVTLACSAVAVLAAILLGYLMVRSIVKPLNEAVRVAENVAA 233 Q+V +G AI + L SAVA+ ++ +L+ RSI +PLNEAV VA VAA Sbjct: 175 E----QSVTEGRDTTQSAIAMMLGLSAVAIALCVIAAWLVTRSITRPLNEAVSVASAVAA 230 Query: 234 GDLTTRIEPHSKDETGQLMAALRKMNDNLVDIVSGVRRSTDSIATASGEIASGNMDLSSR 293 GDLT +I SKDETG L+AAL+ MND+L IVS VR+ +D+I TAS EIA+GN+DLSSR Sbjct: 231 GDLTVQIGATSKDETGALLAALKSMNDSLHRIVSEVRQGSDTINTASAEIATGNLDLSSR 290 Query: 294 TX--AGSLEETASAMEEMTSTVRQNADNARQANQLAATASEVALQGGEIVGRVVTTMEEI 351 T AG+LEETASAMEE+TSTV+QNADNARQAN LAATASEVA+QGG +VG+VV TM EI Sbjct: 291 TEEQAGALEETASAMEELTSTVKQNADNARQANSLAATASEVAVQGGSVVGQVVQTMGEI 350 Query: 352 NQSSRKIVDIIGVIDGIAFQT 372 N +SRKIVDII VIDGIAFQT Sbjct: 351 NDASRKIVDIISVIDGIAFQT 371 >gi|300309376|ref|YP_003773468.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 534 Score = 239 bits (611), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 154/374 (41%), Positives = 232/374 (62%), Gaps = 11/374 (2%) Query: 5 FGNLKVGARLAIVFAFIVALLAVVSITAFIKINNINRAIDQIVNDRYLKVRWAFDLRDGV 64 N+ + RL + F ++ L+ ++ + ++ +N + +++D+Y K A D+ D + Sbjct: 3 LSNVTIRVRLWLGFGLLMVLMLAMAASGIARLGQLNAQMKDVIHDKYPKTVVAGDIVDQL 62 Query: 65 NEQIKYLRGMAIDIGNP--AANEKRIGQLDVAVRASKEALDKITARQVTAVGQKKA--KA 120 N + +R + + P + +RI D A+R LDK+ G +A Sbjct: 63 NLIARSVRNILLLKREPQIKSEYERISGADRAIREDLAQLDKLLTD-----GDSRAALTT 117 Query: 121 LDDARQLFETSRTQFLALIRAGQGDAADEFVLRKITDSQNAYLSLATAFADSQDSQLRAE 180 L A+ + R + LA+++ G + A + ++ ++ Q+A ++ A A Q ++ Sbjct: 118 LVTAQNAYFEKRDKVLAMVQQGGKEGAIDMLIDEVRPVQSATMNAADALIRQQHEMMKTA 177 Query: 181 GAQAVADGALAIQVTLACSAVAVLAAILLGYLMVRSIVKPLNEAVRVAENVAAGDLTTRI 240 G + ++ A A + L +A + AA ++ +++ RSI PL+ AVRVAE VAAGDLT+ I Sbjct: 178 GDEVESNYAQARTLLLLLAAAGLAAAAVIAWMITRSITAPLDRAVRVAETVAAGDLTSAI 237 Query: 241 EPHSKDETGQLMAALRKMNDNLVDIVSGVRRSTDSIATASGEIASGNMDLSSRT--XAGS 298 + H +DET L+ AL+KMND L+DIVS VR STD+IATAS EIA GN+DLSSRT A S Sbjct: 238 DAHGRDETSMLLRALKKMNDRLLDIVSQVRVSTDTIATASSEIARGNLDLSSRTEEQAAS 297 Query: 299 LEETASAMEEMTSTVRQNADNARQANQLAATASEVALQGGEIVGRVVTTMEEINQSSRKI 358 LEETAS+ME++T+TV+QNA +A QA+QLA +AS++A QGGE+VG VV TM I+ SS+KI Sbjct: 298 LEETASSMEQLTATVKQNASHAGQASQLAGSASDIARQGGEVVGHVVETMGAIDASSKKI 357 Query: 359 VDIIGVIDGIAFQT 372 VDIIGVIDGIAFQT Sbjct: 358 VDIIGVIDGIAFQT 371 >gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 583 Score = 236 bits (602), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 156/376 (41%), Positives = 219/376 (58%), Gaps = 15/376 (3%) Query: 5 FGNLKVGARLAIVFAFIVALLAVVSITAFIKINNINRAIDQIVNDRYLKVRWAFDLRDGV 64 F NL + RLAI F+ ++ ++A + ++ +IN+A+D +VNDRY K+ + V Sbjct: 3 FNNLSIATRLAIAFSILILVIAGIVALGLARLADINKALDLVVNDRYKKIAIINTISGKV 62 Query: 65 NEQIKYLRG--MAIDIGNPAANEKRIGQLDVAVRASKEALDKITARQVTAVGQKKAKALD 122 ++ LR + D AA +K I L + + D++T + K + Sbjct: 63 DDVAISLRNQLLMTDPAQIAAEQKTIESLSAE---NTKLYDELTRLVANPEAKAKLDKVT 119 Query: 123 DARQLFETSRTQFLALIRAGQGDAADEFVLRKITDSQNAYLSLATAFADSQDSQLRAEGA 182 + R+ + R Q L +G DAA + +L ++ Q Y S +D+Q + Sbjct: 120 ETRKSYAALRKQIDKLQSSGDKDAAIKLMLSEMVPLQKIYFSQLDELSDTQQKLMD---- 175 Query: 183 QAVADGALAIQVTLACSAVA-VLAAILLGYL---MVRSIVKPLNEAVRVAENVAAGDLTT 238 Q+V A + T +A VLAA ++ + RSI +PL+ AV VAE VAAGDLT Sbjct: 176 QSVDQAEAAYETTRMIMVIAGVLAATFAAFIAWTISRSITRPLSRAVEVAETVAAGDLTA 235 Query: 239 RIEPHSKDETGQLMAALRKMNDNLVDIVSGVRRSTDSIATASGEIASGNMDLSSRTX--A 296 I HS DETG+L+ AL MN L IV VRR TDS+ TAS +IA+GN+DLSSRT A Sbjct: 236 VIAAHSNDETGRLLQALAAMNQKLKAIVLEVRRGTDSMVTASTQIATGNLDLSSRTEEQA 295 Query: 297 GSLEETASAMEEMTSTVRQNADNARQANQLAATASEVALQGGEIVGRVVTTMEEINQSSR 356 +LEETAS++EE+TS+V+QNAD+ R++++LAA AS+VA QGG V +VV TM IN SS Sbjct: 296 SALEETASSLEELTSSVKQNADHTRKSSELAANASQVANQGGLAVKQVVQTMGAINDSSH 355 Query: 357 KIVDIIGVIDGIAFQT 372 KIVDII VIDGIAFQT Sbjct: 356 KIVDIISVIDGIAFQT 371 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.129 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,094,194 Number of extensions: 38035 Number of successful extensions: 461 Number of sequences better than 1.0e-08: 65 Number of HSP's gapped: 344 Number of HSP's successfully gapped: 65 Length of query: 487 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 398 Effective length of database: 1,198,455 Effective search space: 476985090 Effective search space used: 476985090 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)