BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0111.p
         (291 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311628|ref|YP_003775720.1| metallo-beta-lactamase [Herbasp...   514   e-147

>gi|300311628|ref|YP_003775720.1| metallo-beta-lactamase
           [Herbaspirillum seropedicae SmR1]
          Length = 292

 Score =  514 bits (1324), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 245/290 (84%), Positives = 261/290 (90%)

Query: 1   MDNLHIEGHFDTITSTVSYLVLDRATLHCALVDSVLDYDPKSGRTSTRSADHLIARVQAL 60
           MD LHIEGHFDT TSTVSYLVLDRA+  CAL+D+VLDYDPKSGRT+T SAD LIARV+ L
Sbjct: 2   MDKLHIEGHFDTTTSTVSYLVLDRASGQCALIDTVLDYDPKSGRTATTSADQLIARVREL 61

Query: 61  GATVQWILETHAHADHLSAAPYLKQKLGGRIAIGEHIRQVQQVFGKLFNAGTEFEHDGSQ 120
           GA VQWILETHAHADHLSAAPYLKQ+LGGRIAIGEHI QVQ VFGKLFNAG  F HDGSQ
Sbjct: 62  GAQVQWILETHAHADHLSAAPYLKQQLGGRIAIGEHITQVQAVFGKLFNAGAAFAHDGSQ 121

Query: 121 FDHLFTDGETFRIGQLQARVMHTPGHTPACVTYVVEEAGQIAAFVGDTLFMPDYGTARCD 180
           FD LF DG  F+IGQLQARVMHTPGHTPAC+TYVVEEAG IAAFVGDTLFMPDYGTARCD
Sbjct: 122 FDQLFADGARFQIGQLQARVMHTPGHTPACLTYVVEEAGHIAAFVGDTLFMPDYGTARCD 181

Query: 181 FPGGDARQLFRSINAVLSLPPQTRLFMCHDYQPRGRELRFETTVAEERQHNIHVREGISE 240
           FPGGDAR LFRSI AVLSLP   +L+MCHDY+P GRELR+ TTVAEER+HNIHV EG+SE
Sbjct: 182 FPGGDARTLFRSIQAVLSLPDHAQLYMCHDYRPNGRELRYVTTVAEERRHNIHVHEGVSE 241

Query: 241 EAFVAMRSARDATLDMPVLLLPSVQVNMRAGQMPPAEGNGVRYLKIPLNA 290
           E+FV MR ARDATLDMPVLLLPSVQVNMRAGQ+PPAE NGVRYLKIPLNA
Sbjct: 242 ESFVTMRKARDATLDMPVLLLPSVQVNMRAGQLPPAEDNGVRYLKIPLNA 291


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 959,555
Number of extensions: 40057
Number of successful extensions: 118
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 207
Effective length of database: 1,222,130
Effective search space: 252980910
Effective search space used: 252980910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)