BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0103.p
         (254 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311634|ref|YP_003775726.1| NADH:ubiquinone oxidoreductase ...   321   4e-89

>gi|300311634|ref|YP_003775726.1| NADH:ubiquinone oxidoreductase
           subunit L/Multisubunit Na+/H+ antiporter MnhA subunit
           [Herbaspirillum seropedicae SmR1]
          Length = 536

 Score =  321 bits (822), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 178/257 (69%), Positives = 205/257 (79%), Gaps = 5/257 (1%)

Query: 1   VLLIVSAGTVLLAGLVMLTRISIKVKLAWSTVAQMGFMLLECAAGLYLFAALHLIGHSLY 60
           VLL+++  TVLLAG+VMLTRISIKV+LAWSTVAQMGFMLLECAAGLY FAALHLIGHSLY
Sbjct: 282 VLLLMAVATVLLAGMVMLTRISIKVRLAWSTVAQMGFMLLECAAGLYTFAALHLIGHSLY 341

Query: 61  KAHAFLSASSVVRETRLSALHSPALPSAWSVILAPMVSIALVLGLHSLSPHAAWPWWWSG 120
           KAHAFLSASSVVRETRL ALH  A PSA SVI+AP+ S A+VL L +L  H  WPWWWS 
Sbjct: 342 KAHAFLSASSVVRETRLQALHDKAQPSAASVIVAPLASSAVVLALQTLHAHTGWPWWWSV 401

Query: 121 ILGLAWAPLLW---RSTAKGSGGLRGWLLGLLGAAGLTLAALVAHLLPLHVNDYPRAVFG 177
           +LGLAWAPLLW    ST   +  LR WLLGL GAAGLT+AA++ HLLPL ++D+ + +FG
Sbjct: 402 VLGLAWAPLLWLPQASTVSTAMRLRSWLLGLTGAAGLTVAAMLLHLLPLGLDDFAQPLFG 461

Query: 178 VTALLAMLALYVCMGLLQLAPQSMAAWRRRSYAGFYLDEAYTRLALQLWPSNWAPSARRA 237
           +  L  MLALY C+ LL + PQ+M AWRRRSYAGFYLDEAYTRLALQLWP+ WAP ARRA
Sbjct: 462 MATLAGMLALYGCVALLLVRPQAMTAWRRRSYAGFYLDEAYTRLALQLWPARWAPQARRA 521

Query: 238 AAEQQVNNLAADGRSQG 254
                 + LA+D  +QG
Sbjct: 522 PHRAPPSTLASD--TQG 536


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.134    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 736,148
Number of extensions: 27602
Number of successful extensions: 156
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 171
Effective length of database: 1,226,865
Effective search space: 209793915
Effective search space used: 209793915
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)