BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0102.p
         (839 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311635|ref|YP_003775727.1| hypothetical protein Hsero_2320...  1220   0.0  

>gi|300311635|ref|YP_003775727.1| hypothetical protein Hsero_2320
           [Herbaspirillum seropedicae SmR1]
          Length = 838

 Score = 1220 bits (3156), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 634/842 (75%), Positives = 716/842 (85%), Gaps = 9/842 (1%)

Query: 1   MNVLAQDSQGP-AAAPIAAWSAELEQQLQQACQDACGAIAPAWPLDRAIAVNPHWSRVGM 59
           MN   Q +Q   AA P AAW    E  L QAC  AC AIAPAWPLDRAIAVNPHWSR+GM
Sbjct: 1   MNATTQHTQSALAATPDAAW----ESALDQACAQACAAIAPAWPLDRAIAVNPHWSRIGM 56

Query: 60  PLRQVAARMALLGGIQVFPPKEQLQQAWDQGRVTEADLEYALAHSIEAQERGFDVAHCLS 119
           PLR+VAARMALLGGIQV P + QL+QAW +GR++ ADL  AL     A+  G D AHC +
Sbjct: 57  PLREVAARMALLGGIQVLPARAQLRQAWAEGRISAADLHLALGRLPAARAAGLDAAHCQA 116

Query: 120 VLAATGPAPRLPLLIDVLDNDPQRHTRLSWRQAITHQVSQTCAAYFDQHQADWQPERGQG 179
           VLA+     +LPLLIDVLDNDPQRHTRLSWRQAITHQVSQTCAAYFD+HQADWQPER  G
Sbjct: 117 VLASDSRPAQLPLLIDVLDNDPQRHTRLSWRQAITHQVSQTCAAYFDRHQADWQPERDNG 176

Query: 180 LYAFWRETLEHDHGIGLLMGLPHIADGVRALPACAREAERWVMRRMDLPPEVWADYLESV 239
           LYAFWRETLEHDHGIGLLMGLPHIA G++ALPACAREAERWVM+R+ LP EVWADYLE+V
Sbjct: 177 LYAFWRETLEHDHGIGLLMGLPHIAHGIQALPACAREAERWVMQRLGLPAEVWADYLEAV 236

Query: 240 LLTVNGWASWCAYLGWEAKLAGGSDEHLRELLAIRMAWGALLLECKDDEAASHAFHTVQQ 299
           LLTVNGWASWCAYLGW+A+L G  D HLRELLAIRMAWGALLLECKDD+AA+ AF TVQQ
Sbjct: 237 LLTVNGWASWCAYLGWQARLQGQDDPHLRELLAIRMAWGALLLECKDDDAATQAFSTVQQ 296

Query: 300 AWARSQERLEQVRQDLLVDELWQVALEAGYQRKLAAALLQQSANAAPQVEVQAAFCIDVR 359
           AW R++ERL+QVR +L+VDE+WQ+ALE GYQR+LA ALLQ    A   +EVQAAFCIDVR
Sbjct: 297 AWGRARERLQQVRDELVVDEVWQLALEVGYQRQLAQALLQDRTAAGAAIEVQAAFCIDVR 356

Query: 360 SEPLRRALEAVHPGMQTMGFAGFFGLPVAYTPLATEASRPQLPGLLAPAYQVQDVVAPAG 419
           SEP+RRALE +HPG+QT+G AGFFGLPVAYTPL T+A+RPQLPGLLAPAYQVQ+ + PA 
Sbjct: 357 SEPMRRALERLHPGVQTLGVAGFFGLPVAYTPLGTQAARPQLPGLLAPAYQVQEQIIPAA 416

Query: 420 AAT----GDGLLAGAVARARRKSLALKEQWQGNTRWPGSAFSFVEVAGVTALGGLWKWLQ 475
            A        +LA A ARAR + LA K QWQGNTRWPGSAFSFVEVAGV+ALGGLW WL+
Sbjct: 417 GAGAGAADSTVLASAAARARHRQLAGKAQWQGNTRWPGSAFSFVEVAGVSALGGLWNWLR 476

Query: 476 PGQAERARDDLAGLPTRYREVCRPQLVGVALEDKVALAARVLHAMGLDRQVAPLVLLAGH 535
           PG+  RARDDLAGLPTRYR +CRPQL GV+  DKVALAAR+LHAMGLDR VAPLVLL GH
Sbjct: 477 PGRGARARDDLAGLPTRYRALCRPQLSGVSEADKVALAARILHAMGLDRAVAPLVLLVGH 536

Query: 536 GSQSANNAHAAALDCGACCGQTGEVNARTLAQLLNEQEVRRGLLDRQIFIPEDSHFLAVL 595
           GSQSANNAHAAALDCGACCGQTGEVNARTLAQLLNE  VRRGLL + + +PE++ FLA+L
Sbjct: 537 GSQSANNAHAAALDCGACCGQTGEVNARTLAQLLNEHSVRRGLLAQGVDLPEETAFLALL 596

Query: 596 HNTTTDEIEAFDLDLMPAAARARWQALQPVLAEAGDHVRRERALRLGMEPAQAAPALLKQ 655
           HNTTTDE+EAFDLDL+PA A+ RW A++ V A AG+ VRRERA RLG++  Q A  LL+ 
Sbjct: 597 HNTTTDEVEAFDLDLLPAPAQQRWAAMREVFARAGEQVRRERAARLGLDGEQPAARLLQA 656

Query: 656 LRRRANDGAETRPEWGLTGNAAFLIAPRSRTRGLDLGGRCFLHDYEASEDRDGSVLELLM 715
           LRRRANDGA+TRPEWGLTGNAAFLIAPR+R+RG+DLGGRCFLHDY+ +ED +G++LE LM
Sbjct: 657 LRRRANDGAQTRPEWGLTGNAAFLIAPRARSRGIDLGGRCFLHDYDPTEDGEGALLEQLM 716

Query: 716 TAPMLVTHWINWQYHASTSDPQRLGSGNKLLHNVVGGTIGVFEGNGGDLRIGLSRQSLHD 775
           TAPMLVTHWINWQYHASTSDPQRLGSGNKLLHNVVGG IGVFEGNGGDLRIGL+RQSLHD
Sbjct: 717 TAPMLVTHWINWQYHASTSDPQRLGSGNKLLHNVVGGAIGVFEGNGGDLRIGLARQSLHD 776

Query: 776 GQQWVHEPLRLTVVIDAPAEAIDAVVARHAIVRQLLEHGWLHLWRFGEAGLEQWRREGWK 835
           GQ+W+HEPLRLTVVIDAP  AI+ V+A HA+VRQLLE+GWLHLWRFGEAGL +   +GW 
Sbjct: 777 GQRWLHEPLRLTVVIDAPEAAIERVIAAHAVVRQLLENGWLHLWRFGEAGLLERGEQGWV 836

Query: 836 SI 837
           ++
Sbjct: 837 AV 838


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,776,496
Number of extensions: 121767
Number of successful extensions: 390
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 389
Number of HSP's successfully gapped: 1
Length of query: 839
Length of database: 1,619,870
Length adjustment: 93
Effective length of query: 746
Effective length of database: 1,179,515
Effective search space: 879918190
Effective search space used: 879918190
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 135 (56.6 bits)