BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0101.p (264 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311236|ref|YP_003775328.1| hypothetical protein Hsero_1911... 123 1e-29 gi|300314042|ref|YP_003778134.1| signal transduction protein con... 96 2e-21 gi|300312606|ref|YP_003776698.1| EAL domain transmembrane protei... 90 2e-19 gi|300309360|ref|YP_003773452.1| hypothetical protein Hsero_0014... 89 3e-19 gi|300312026|ref|YP_003776118.1| signal transduction protein con... 87 1e-18 >gi|300311236|ref|YP_003775328.1| hypothetical protein Hsero_1911 [Herbaspirillum seropedicae SmR1] Length = 600 Score = 123 bits (309), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 71/217 (32%), Positives = 110/217 (50%), Gaps = 4/217 (1%) Query: 38 YQPIVRLSTRAVYAYEALVRGPQGEPAYTVLEQVNDSNRY----RFDQACRTKAVEGAAR 93 +QPIVR+ + YE L+RGP P ++ L + + + + CR + A+ Sbjct: 25 FQPIVRMRNGEILGYEGLIRGPSNTPLHSPLALFKVARAHNMSVQMEYLCRHIVLTRFAQ 84 Query: 94 LGMTQFLSINFLPNAVYRPEVCIQSTFKAARKYDFPIERIIFEVTEGERVDDRPHLVNIF 153 LG+ L +N P A+ +PE T + +RII E+TE E D L N Sbjct: 85 LGLPGNLFLNVSPGALMQPEAIQGETLRYLDTLGVNPQRIIIELTENEPTYDYAQLRNAA 144 Query: 154 REYSRFGFRTAIDDFGAGYAGLNLLAEYQPDLIKIDMDLVRNIDTDKPRQAIVAGIAAIC 213 Y GF+ AIDD G G++ L L +E QP+ +K+DM V+ I+ D + V I I Sbjct: 145 MHYRDMGFQIAIDDLGEGFSSLRLWSELQPEYVKVDMHFVQGINHDPMKLQFVRSIQEIA 204 Query: 214 KELDIEILAEGVETRAERDHLAALGIDLMQGYWFAKP 250 ++ ++AEG+E++AE + LGI QGY ++P Sbjct: 205 EKSGSIVIAEGIESQAELLTIRDLGIACGQGYHISRP 241 >gi|300314042|ref|YP_003778134.1| signal transduction protein containing a membrane domain, an EAL and a GGDEF domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 948 Score = 96.3 bits (238), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 74/233 (31%), Positives = 106/233 (45%), Gaps = 22/233 (9%) Query: 33 EFEYAYQPIVRLSTRAVYAYEALVR--GPQ------------GEPAYTVLEQVNDSNRYR 78 EF YQP V L++ V EAL+R PQ E +L R Sbjct: 706 EFLLHYQPKVDLASGRVIGSEALIRWQHPQLGMVSPARFIGLAEETGLILPIGAWVLRAA 765 Query: 79 FDQACRTKAVEGAARLGMTQFLSI-NFLPNAVYRPEVCIQSTFKAARKYDFPIERIIFEV 137 Q CR + G A + ++ LS+ FL + + S P E + E+ Sbjct: 766 CTQ-CRQWQLGGYADISVSVNLSVGQFLQKDL------VSSIADVLEDTGLPPESLELEL 818 Query: 138 TEGERVDDRPHLVNIFREYSRFGFRTAIDDFGAGYAGLNLLAEYQPDLIKIDMDLVRNID 197 TE + D H + I + G R +IDDFG GY+ L L + D++KID VR+I Sbjct: 819 TESLMMTDVEHAIGILAGLKKLGVRLSIDDFGTGYSSLAYLKRFPIDVLKIDRSFVRDIT 878 Query: 198 TDKPRQAIVAGIAAICKELDIEILAEGVETRAERDHLAALGIDLMQGYWFAKP 250 D AI A I ++ + L + ++AEGVET + D+L G D +QGY F+ P Sbjct: 879 IDADDAAITASIISLARHLKLRVIAEGVETDEQLDYLRHYGCDEIQGYLFSPP 931 >gi|300312606|ref|YP_003776698.1| EAL domain transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 695 Score = 90.1 bits (222), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 105/231 (45%), Gaps = 18/231 (7%) Query: 33 EFEYAYQPIVRLSTRAVYAYEALVRGPQGEPAYTVLEQ-VNDSNR---------YRFDQA 82 +F YQP L V EAL+R +Q + + R + D+A Sbjct: 452 QFRLVYQPKFSLPAGPVLGAEALLRWEHPVHGLVAPDQFIGLAERSGLILPIGAWVLDEA 511 Query: 83 CRTKAVEGAARLGMTQF-LSINFLPNAVYRPEV--CIQSTFKAARKYDFPIERIIFEVTE 139 CR A LG + +S+N P + +++T + ++ P + EVTE Sbjct: 512 CRQMREWFA--LGYVDWTMSVNLSALQFADPHLLEVVRTTLE---RHQLPPPCLTLEVTE 566 Query: 140 GERVDDRPHLVNIFREYSRFGFRTAIDDFGAGYAGLNLLAEYQPDLIKIDMDLVRNIDTD 199 + D + R+ + G +IDDFG GY+ L L + +KID VR + D Sbjct: 567 STAMHDTEASLQTLRQIADLGVEISIDDFGTGYSSLLYLKRLPANELKIDRGFVRELRQD 626 Query: 200 KPRQAIVAGIAAICKELDIEILAEGVETRAERDHLAALGIDLMQGYWFAKP 250 AIV+ I A+ + L++ I+AEGVET ++D L A G D +QGY +P Sbjct: 627 GEDAAIVSAIVALGRTLNLRIVAEGVETVEQQDFLTAAGCDALQGYLMGRP 677 >gi|300309360|ref|YP_003773452.1| hypothetical protein Hsero_0014 [Herbaspirillum seropedicae SmR1] Length = 726 Score = 89.4 bits (220), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 45/127 (35%), Positives = 68/127 (53%) Query: 124 RKYDFPIERIIFEVTEGERVDDRPHLVNIFREYSRFGFRTAIDDFGAGYAGLNLLAEYQP 183 R++ P + E+TE VD ++ + ++DDFG GY+ L+ L + Sbjct: 583 REHHVPSHSVKVELTESMMVDHIEDVITKMQALRSNEVSISLDDFGTGYSSLSYLGRFPI 642 Query: 184 DLIKIDMDLVRNIDTDKPRQAIVAGIAAICKELDIEILAEGVETRAERDHLAALGIDLMQ 243 D IKID VR + D +I+ I + + L++ I+AEGVET +RD L A G L Q Sbjct: 643 DQIKIDQTFVREMQNDAAMASIIRSIIMLGQSLNLSIIAEGVETEQQRDFLHAQGCLLYQ 702 Query: 244 GYWFAKP 250 GYW++KP Sbjct: 703 GYWYSKP 709 >gi|300312026|ref|YP_003776118.1| signal transduction protein containing a membrane domain, an EAL and a GGDEF domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 1106 Score = 87.4 bits (215), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 107/229 (46%), Gaps = 14/229 (6%) Query: 33 EFEYAYQPIVRLSTRAVYAYEALVRG--------PQGEPAYTVLEQ---VNDSNRYRFDQ 81 EF YQP + L+ + EALVR P GE T+ E+ ++ D Sbjct: 857 EFVVHYQPKIELAEGRIVGAEALVRWQHPLRGLLPPGE-FITLAEETRLIDQIGLLVLDV 915 Query: 82 ACRTKAVEGAARLGMTQFLSINFLPNAVYRPEVCIQSTFKAARKYDFPIERIIFEVTEGE 141 ACR + ++ + +SIN L + + E + + ++ P + FE+TE Sbjct: 916 ACRDIGLMRQQQMTCGR-ISIN-LTGSQFGDERLLDDIKEVVDRHGTPPSCLEFEITESM 973 Query: 142 RVDDRPHLVNIFREYSRFGFRTAIDDFGAGYAGLNLLAEYQPDLIKIDMDLVRNIDTDKP 201 + +R + I GF +IDDFG GY+ L L + + +KID + +I + Sbjct: 974 VMHNRERAIAIMDGIRAEGFTISIDDFGTGYSSLAYLKRFPVNTLKIDKSFINDIPDNPN 1033 Query: 202 RQAIVAGIAAICKELDIEILAEGVETRAERDHLAALGIDLMQGYWFAKP 250 AIV I A+ L+++++ EGVET + L G D QGY+F+KP Sbjct: 1034 SSAIVQAIIAMSHALNLKVVTEGVETEKQLQALREFGSDEYQGYYFSKP 1082 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.139 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 823,869 Number of extensions: 34154 Number of successful extensions: 103 Number of sequences better than 1.0e-08: 18 Number of HSP's gapped: 97 Number of HSP's successfully gapped: 18 Length of query: 264 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 181 Effective length of database: 1,226,865 Effective search space: 222062565 Effective search space used: 222062565 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)