BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0095.p
         (161 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311636|ref|YP_003775728.1| hypothetical protein Hsero_2321...   232   8e-63
gi|300312814|ref|YP_003776906.1| 4-carboxymuconolactone decarbox...    84   6e-18

>gi|300311636|ref|YP_003775728.1| hypothetical protein Hsero_2321
           [Herbaspirillum seropedicae SmR1]
          Length = 206

 Score =  232 bits (592), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 108/124 (87%), Positives = 119/124 (95%)

Query: 1   MKRFLRIALASTLLSAAVAQAADRLPVIPPDQYTPEQKKAADEFLAARKVPVFGPFEPLM 60
           M + L + +ASTLL+ ++AQAADRLPVIPP+QYTPEQK+AADEFLAARKVPVFGPFEPLM
Sbjct: 1   MNKALTMTIASTLLAGSLAQAADRLPVIPPEQYTPEQKQAADEFLAARKVPVFGPFEPLM 60

Query: 61  HSPQVMTQARSMGDYLRYNSAIGNTLSELVILITAREWTQDYEWYVHYPIAIKAGIKPEV 120
           HSPQVMTQAR+MGDYLRY+SAIGNTLSELVILITAREWTQDYEWYVHYPIAIKAGIKPE+
Sbjct: 61  HSPQVMTQARAMGDYLRYHSAIGNTLSELVILITAREWTQDYEWYVHYPIAIKAGIKPEI 120

Query: 121 AAAI 124
           AAAI
Sbjct: 121 AAAI 124


>gi|300312814|ref|YP_003776906.1| 4-carboxymuconolactone
           decarboxylase domain-containing protein [Herbaspirillum
           seropedicae SmR1]
          Length = 191

 Score = 84.0 bits (206), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 60/103 (58%)

Query: 22  ADRLPVIPPDQYTPEQKKAADEFLAARKVPVFGPFEPLMHSPQVMTQARSMGDYLRYNSA 81
           ++RLP I  +Q T EQ    D  LA  +  + GPF   +HSP +   A+ +G + RY + 
Sbjct: 4   SNRLPAIVREQMTSEQTAMLDAILAGPRKNLNGPFVAWIHSPALGELAQRLGAFCRYETG 63

Query: 82  IGNTLSELVILITAREWTQDYEWYVHYPIAIKAGIKPEVAAAI 124
           +   LSEL IL TA  W    EW++H PIA++AGI P+VA  I
Sbjct: 64  LPLRLSELAILATAAAWQSQAEWHIHLPIAVEAGILPDVAEQI 106


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.130    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 423,162
Number of extensions: 14356
Number of successful extensions: 60
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 2
Length of query: 161
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 83
Effective length of database: 1,250,540
Effective search space: 103794820
Effective search space used: 103794820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)