BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0088.p (448 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311751|ref|YP_003775843.1| signal transduction histidine k... 352 4e-98 gi|300313679|ref|YP_003777771.1| transmembrane sensor histidine ... 172 4e-44 gi|300312689|ref|YP_003776781.1| transmembrane sensor kinase tra... 172 6e-44 gi|300309980|ref|YP_003774072.1| two component transmembrane sen... 169 6e-43 gi|300313819|ref|YP_003777911.1| two component sensor histidine ... 160 3e-40 >gi|300311751|ref|YP_003775843.1| signal transduction histidine kinase [Herbaspirillum seropedicae SmR1] Length = 446 Score = 352 bits (902), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 203/435 (46%), Positives = 285/435 (65%), Gaps = 5/435 (1%) Query: 2 KLSVILCMAILLVAIVAGVFSFVSALDESHELQDDMLRQIAHLMERQRLSSASPVPEVSY 61 +LS+ L AIL+VA+ AG F FV+A +S QDD+L Q+ L++ + + ++ Sbjct: 15 QLSLALTAAILVVALGAGGFGFVTAYRDSIRSQDDLLMQVGALLKHSGAALSLEGAGMAA 74 Query: 62 ASSNEESRVIVQHLGYSASKAEIDAEEA-LPLSSTLMDGLHDIDAAGENFRVLVQTMPSG 120 A +SRV VQ L + A+ A LPL + L +G H + E FRV VQ +P+G Sbjct: 75 AGDEHDSRVTVQWL---PDPGDPPADAAPLPLPADLAEGFHTLLLHHEYFRVYVQALPNG 131 Query: 121 ERIAVAQESDFRNEIARDGALRTIMPFLLLVPVLLLIVADLIRKMFRPIAALSKEVDQRQ 180 +R+A+AQE+D R IA+ A R + PF++L P+LLL V +I+++F P+ AL +E+D R Sbjct: 132 KRLALAQETDLRQHIAQRSAWRALWPFVVLAPLLLLAVQRIIKRLFAPLQALRQEIDSRG 191 Query: 181 DEQLHPVEVSHFPVEVRPFAVAINRLLGRIDQSMASQRRFVADAAHELRSPMTAISLQAE 240 ++ L P+ P EV+ F AIN LL R++ MA+QRRFVADAAHELR+P+TA+SLQAE Sbjct: 192 EDDLQPIAERLLPREVQAFVAAINGLLARVEAGMAAQRRFVADAAHELRTPLTALSLQAE 251 Query: 241 RLEEADMSEQARQRLRALREGIDRGRNLLNQLLALAKAQSSVSAVATPISVQTIYRRVLE 300 RL A MSE AR+RL L G+ R R L+ QLLALA+AQ+ A P S+ + R V+E Sbjct: 252 RLGRAPMSETARERLTRLETGLQRARQLVTQLLALARAQTPAGAALQPCSLHQVLREVIE 311 Query: 301 DLMPLAESKQIDIGVDGQRDARLLVGELDLFALVRNLADNAVRYTPNGGKVDLALEFEDE 360 +L+PLA+ KQID+G+DG+RDA +L +L L+RNL DNA+ YTP GG V L +E + Sbjct: 312 ELLPLAQCKQIDLGLDGERDACVLTQPQELAQLLRNLIDNAIAYTPAGGAVSLRMERHAQ 371 Query: 361 NVVLIVEDSGPGIPVVERARIFEAFHRLLGSNQIGSGLGLSIVKAIADRLGASITLGFRD 420 V L + D+GPGI ER R+F+ F+R+ S Q GSGLGL+IV++IA RLG ++ L D Sbjct: 372 WVALEICDTGPGIAASERERVFQPFYRIDPSGQ-GSGLGLAIVQSIARRLGVTLRLEAAD 430 Query: 421 ESDRSGLRVAVSIPS 435 + +SGLRV + IP Sbjct: 431 PAQQSGLRVRLLIPG 445 >gi|300313679|ref|YP_003777771.1| transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 444 Score = 172 bits (437), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 141/413 (34%), Positives = 219/413 (53%), Gaps = 31/413 (7%) Query: 14 VAIVAGVFSFVSALDESHELQDDMLRQIAHLMERQRLSSASP---VPEVSYASSNEESRV 70 + ++AGV + A E++++ D +RQIA + RQ S SP PE+ E + Sbjct: 19 IIVLAGVALYFQARGEANQIFDYQMRQIAASLPRQAFSPISPGQQFPEL-------EDEI 71 Query: 71 IVQHLGYSASKAEI---DAEEALPLSSTLMDGLHDIDAAGENFRVLVQTMPSGERIAVAQ 127 ++Q + + A I A A+P + L G ++ +RV + S + VAQ Sbjct: 72 MMQI--WDSRGAVIYHSHARGAMPRQAEL--GFANVSGPNGMWRVYSAQIGS-TVVQVAQ 126 Query: 128 ESDFRNEIARDGALRTIMPFLLLVPVLLLIVADLIRKMFRPIAALSKEVDQRQDEQLHPV 187 R+EIA A++T++P LLL P++ ++ + + P+ + EV R L P+ Sbjct: 127 PQSARDEIAAQMAVKTVVPLLLLFPLIGVLSWVAVSRGLAPVRKAAAEVAARDMNSLQPL 186 Query: 188 EVSHFPVEVRPFAVAINRLLGRIDQSMASQRRFVADAAHELRSPMTAISLQAERLEEADM 247 P E++P A+N LL R+ + +QR FVADAAHELR+P+TA+ LQ + E A Sbjct: 187 ADVGMPQEIQPLTHALNDLLARLKHATETQRAFVADAAHELRTPLTALRLQTQLAERAVD 246 Query: 248 SEQARQRLRALREGIDRGRNLLNQLLALAKAQSSVSAVATPISVQTIYRRVLEDLMPLAE 307 E+ R L+ G++R +L++QLL LA+ + + T + ++ + V+ DL +AE Sbjct: 247 EEERRAAFADLKNGLERTTHLVHQLLTLARQEPDAMSF-TQVDLRALLGSVVGDLSSVAE 305 Query: 308 SKQIDIGVDGQR-DARLL--VGELD-LFALVRNLADNAVRYTPNGGKVDLALEFEDEN-V 362 ID+G+ Q D R L G D L L NL DNA+RYTP GG VD+ ++ Sbjct: 306 HGGIDLGLSDQGDDGRPLRVTGNADALRILFNNLVDNALRYTPAGGVVDVGVDLSTAGYC 365 Query: 363 VLIVEDSGPGIPVVERARIFEAFHRLLGSNQ-------IGSGLGLSIVKAIAD 408 ++V+DSGPGI E R+F+ F+R S + GSGLGL+IV+ IAD Sbjct: 366 TVVVQDSGPGIAESELPRVFDRFYRAQHSQEGSGSRAAFGSGLGLAIVRQIAD 418 >gi|300312689|ref|YP_003776781.1| transmembrane sensor kinase transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 459 Score = 172 bits (436), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 117/319 (36%), Positives = 181/319 (56%), Gaps = 11/319 (3%) Query: 123 IAVAQESDFRNEIARD---GALRTIMPFLLLVPVLLLIVADLIRKMFRPIAALSKEVDQR 179 ++V Q R E+ D +LR + LLL + L+V L ++ RP+ AL E+ R Sbjct: 143 VSVGQTMQGRQEMIDDQWHASLRRQIVLLLLA--ISLVVLGLTMEL-RPLLALKDELATR 199 Query: 180 QDEQLHPVEVSHFPVEVRPFAVAINRLLGRIDQSMASQRRFVADAAHELRSPMTAISLQA 239 + + L P+ E+RP AIN+ + R++ + Q+RFVADAAH+LR+P+ I Q Sbjct: 200 RPDSLTPLRAGGLQQELRPIVEAINQYIFRLNAQVTVQKRFVADAAHQLRTPLAVIDSQI 259 Query: 240 ERLEEADMSEQARQRLRALREGIDRGRNLLNQLLALAKAQSSVSAVA--TPISVQTIYRR 297 + + D + Q L +L+EG +L N+LL L++A++S S+ P+ + + Sbjct: 260 QFARQLDDPARVAQVLASLQEGSRSMTDLTNKLLLLSQAEASDSSAFPRAPVDLLAVSAM 319 Query: 298 VLEDLMPLAESKQIDIGVDGQRDARLLVG-ELDLFALVRNLADNAVRYTPNGGKVDLALE 356 VLE+L LA K ID+G++ ++ ++ G E L ++ NL DNA+RYTP GGKV + LE Sbjct: 320 VLEELSGLALKKGIDLGLETTLESAMVNGNEAQLMGMLMNLIDNALRYTPEGGKVTVGLE 379 Query: 357 FEDENVVLIVEDSGPGIPVVERARIFEAFHRLLGSNQIGSGLGLSIVKAIADRLGASITL 416 + +++ V D+GPGIP R R+FE F+R +Q GSGLGL+IV+ I SI L Sbjct: 380 KKRSQMIITVSDNGPGIPAEVRERVFERFYRNAAPDQPGSGLGLAIVREIVQASQGSIRL 439 Query: 417 GFRDESDRSGLRVAVSIPS 435 + SGL VS+P+ Sbjct: 440 DAPAQG--SGLVATVSLPA 456 >gi|300309980|ref|YP_003774072.1| two component transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 390 Score = 169 bits (427), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 101/303 (33%), Positives = 177/303 (58%), Gaps = 9/303 (2%) Query: 123 IAVAQESDFRNEIARDGALRTIMPFLLLVPVLLLIVADLIRKMFRPIAALSKEVDQRQDE 182 + V + + R ++A + I+P +++PV L +V + + P++ L + + R+ + Sbjct: 55 VQVGETLEKRAQLANEIIKGVILPQFIILPVALALVWFALSRGLSPLSELQQRIRARRPD 114 Query: 183 QLHPVEVSHFPVEVRPFAVAINRLLGRIDQSMASQRRFVADAAHELRSPMTAISLQAERL 242 L P++ P E+ P ++N +L R+ Q++A Q+RF+ADAAH++++P+ + +Q+E Sbjct: 115 DLSPIDSGQVPEEISPLVRSLNDMLARLSQTIAIQKRFIADAAHQMKTPLAGMRMQSELA 174 Query: 243 EEADMSEQARQRLRALREGIDRGRNLLNQLLALAKA--QSSVSAVATPISVQTIYRRVLE 300 D R+ L L + + L+NQLL+LA+A Q S S P+ + + R V++ Sbjct: 175 LRQDDQVDVRRSLEQLAKSSETATRLVNQLLSLARAENQQSQSGGMIPVELNELARSVVQ 234 Query: 301 DLMPLAESKQIDIGVDGQRDARLLVGE-LDLFALVRNLADNAVRYTPNGGKVDLALEFE- 358 D +P++ +++ID+G + L+ G + L L+ NL DNA+ YTP+ G + + Sbjct: 235 DWVPMSFTQRIDLGFEQPDHPILITGNPVMLRELLSNLLDNALHYTPHDGNGRVTVRART 294 Query: 359 DEN---VVLIVEDSGPGIPVVERARIFEAFHRLLGSNQIGS--GLGLSIVKAIADRLGAS 413 DE +L VED+GPGIPV ERA +FE F+R+LG+ GS GLGL+IV+ IA + A+ Sbjct: 295 DEGGGLAILEVEDNGPGIPVAERANVFERFYRILGTPSTGSGLGLGLAIVREIAQQHEAA 354 Query: 414 ITL 416 + + Sbjct: 355 LEI 357 >gi|300313819|ref|YP_003777911.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 485 Score = 160 bits (404), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 114/313 (36%), Positives = 170/313 (54%), Gaps = 24/313 (7%) Query: 123 IAVAQESDFRNEIARDGALRTIMPFLLLVPVLLLIVADLIRKMFRPIAALSKEVDQRQDE 182 I V + + RN + R T+ LV V L+V +R + RP+ L EV+ R Sbjct: 155 IQVGETMEGRNGMTRKILFDTLWRQGTLVTVAALLVWFAVRFVLRPLMQLKGEVESRAPT 214 Query: 183 QLHPVEVSHFPVEVRPFAVAINRLLGRIDQSMASQRRFVADAAHELRSPMTAISLQAE-- 240 L + + E+RP A+N +GR+ +++QRRF+ADA+H+LR+P+T + Q+E Sbjct: 215 DLSGFDTALVHKEMRPLVQAMNGYMGRLQALISAQRRFIADASHQLRTPLTVLKTQSELT 274 Query: 241 ----RLEEADMSEQARQRLRALREGIDRGRN----LLNQLLALAKAQSSVSAVAT-PISV 291 R E+ D +E LR L EG+ R + L N+LL LA+A+ + T P+S+ Sbjct: 275 LRELRREQVDAAE-----LRDLVEGMARTTDAAVHLANRLLTLARAEHGAAEGGTMPLSL 329 Query: 292 QTIYRRVLEDLMPLAESKQIDIGVDGQRDARLLVGELDLFALVRNLADNAVRYTPNGGKV 351 R+V +L A S++I + + + D + L L L+ NL DNA+RYTP GG V Sbjct: 330 SDAARQVALELSQQAVSREIGLAFEEEGDVSIEANALLLHELMVNLLDNAIRYTPAGGHV 389 Query: 352 DLALEFEDE----NVVLI-VEDSGPGIPVVERARIFEAFHRLLGSNQI---GSGLGLSIV 403 L + + V L+ VEDSGPGIP ER ++FE F+R + + G+GLGLSIV Sbjct: 390 TLRVRAQSSPGQPTVALLEVEDSGPGIPAAEREKVFEPFYRAGATQHVNPGGTGLGLSIV 449 Query: 404 KAIADRLGASITL 416 + IA AS+TL Sbjct: 450 REIAAMHRASVTL 462 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.135 0.361 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,192,651 Number of extensions: 47297 Number of successful extensions: 344 Number of sequences better than 1.0e-08: 36 Number of HSP's gapped: 293 Number of HSP's successfully gapped: 36 Length of query: 448 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 360 Effective length of database: 1,203,190 Effective search space: 433148400 Effective search space used: 433148400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)