BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0087.p (221 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311750|ref|YP_003775842.1| transcription response regulato... 249 1e-67 gi|300313680|ref|YP_003777772.1| two component response regulato... 239 1e-64 gi|300309981|ref|YP_003774073.1| two component response regulato... 181 4e-47 gi|300311842|ref|YP_003775934.1| response regulator transcriptio... 157 1e-39 gi|300312680|ref|YP_003776772.1| two component response regulato... 153 1e-38 >gi|300311750|ref|YP_003775842.1| transcription response regulator protein [Herbaspirillum seropedicae SmR1] Length = 220 Score = 249 bits (636), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 139/220 (63%), Positives = 174/220 (79%), Gaps = 1/220 (0%) Query: 1 MRVLLVEDDAMIGEAIQAALKDASYAVDWIKDGQIAITTITSQHYDIALLDLGLPGKDGL 60 MR+LLVEDDAMIGE ++ ALKD YA DW++ G A+ + Q YD LLDLGLPG DGL Sbjct: 1 MRILLVEDDAMIGEEVRCALKDNGYAADWVRAGDAALLALAQQQYDALLLDLGLPGADGL 60 Query: 61 DVLRSIRAKDIPIPLLIITARDGLDDRLQGLDGGADDYVLKPFQMAELLARMRAVLRRKG 120 VLR +R + +P+L+ITARDG+ DR+ GLD GADDY+LKPF + ELLAR+RAVLRR+ Sbjct: 61 AVLRQLRTHSL-LPVLVITARDGIQDRIGGLDAGADDYLLKPFAIGELLARLRAVLRRRS 119 Query: 121 GIASPLLTNGLLSLDPASKEASLRDGGSIQLSNREFALLQALLMRPGAILSRSELEDRIY 180 G AS L+NG ++LD A+K A R+G ++ LS REFALL AL+ RPGAILSR+ELE+++Y Sbjct: 120 GAASDQLSNGQITLDLAAKTACWREGPAVLLSAREFALLCALMGRPGAILSRAELEEKLY 179 Query: 181 GWNEEVESNAVEYLIHSLRRKLGGDIIKNVRGVGWMVSKA 220 GW EEVESNAVE+LIHSLRRKL + IKNVRG+GW+V +A Sbjct: 180 GWGEEVESNAVEFLIHSLRRKLDKEAIKNVRGMGWLVQRA 219 >gi|300313680|ref|YP_003777772.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 218 Score = 239 bits (610), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 116/217 (53%), Positives = 162/217 (74%), Gaps = 1/217 (0%) Query: 1 MRVLLVEDDAMIGEAIQAALKDASYAVDWIKDGQIAITTITSQHYDIALLDLGLPGKDGL 60 MRVLLVEDD M+GEA++ L+ +A+DW++DG+ A + ++ Y + LLDLGLP KDGL Sbjct: 1 MRVLLVEDDPMVGEAVRKGLRQDGFAIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60 Query: 61 DVLRSIRAKDIPIPLLIITARDGLDDRLQGLDGGADDYVLKPFQMAELLARMRAVLRRKG 120 VLR++R + IP+LI TARD + DR+ GLD GADDY++KPF + EL ARMRA+ RR+ Sbjct: 61 AVLRTLRERGNAIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQA 120 Query: 121 GIASPLLTNGLLSLDPASKEASLRDGGSIQLSNREFALLQALLMRPGAILSRSELEDRIY 180 G A L+ + L+PA+ E ++ G + LS REF LLQA + RPG +LSR++LE+++Y Sbjct: 121 GRAESLVQVREVILNPATHEVTV-SGKPVNLSAREFTLLQAFMDRPGVVLSRAQLEEKLY 179 Query: 181 GWNEEVESNAVEYLIHSLRRKLGGDIIKNVRGVGWMV 217 GW++ +ESNAVE IH+LR+K+G D IKNVRGVG++V Sbjct: 180 GWDDSIESNAVEVHIHALRKKVGSDFIKNVRGVGYLV 216 >gi|300309981|ref|YP_003774073.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 237 Score = 181 bits (459), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 94/221 (42%), Positives = 149/221 (67%), Gaps = 3/221 (1%) Query: 1 MRVLLVEDDAMIGEAIQAALKDASYAVDWIKDGQIAITTITSQHYDIALLDLGLPGKDGL 60 MR+LL EDD+++ + + +L+ + YA D +K+G A + +++Q +D+ +LDLGLP GL Sbjct: 1 MRILLAEDDSVLADGLTRSLRHSGYAADCVKNGVEADSALSTQDFDLLILDLGLPKMSGL 60 Query: 61 DVLRSIRAKDIPIPLLIITARDGLDDRLQGLDGGADDYVLKPFQMAELLARMRAVLRRKG 120 +VLR +RA++ +P+LI+TA D ++ R+QGLD GADDY+ KPF ++EL AR+RA+ RR Sbjct: 61 EVLRRLRARNSRLPVLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRALTRRGA 120 Query: 121 GIASPLLTNGLLSLDPASKEASLRDGGSIQLSNREFALLQALLMRPGAILSRSELEDRIY 180 G ++ +G LS D + A + + ++LS RE LL+ LL R G ++S+ +L D + Sbjct: 121 GGGPTVIRHGPLSYDQVGRIAYIGE-QMLELSARELGLLEVLLQRTGRLVSKEQLVDHLC 179 Query: 181 GWNEEVESNAVEYLIHSLRRKL--GGDIIKNVRGVGWMVSK 219 W EEV +NA+E +H LR+K+ GG I VRG+G+ + K Sbjct: 180 EWGEEVSNNAIEVYVHRLRKKIEVGGVRIATVRGLGYCLEK 220 >gi|300311842|ref|YP_003775934.1| response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 239 Score = 157 bits (396), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 87/219 (39%), Positives = 138/219 (63%), Gaps = 4/219 (1%) Query: 1 MRVLLVEDDAMIGEAIQAALKDASYAVDWIKDGQIAITTITSQHYDIALLDLGLPGKDGL 60 MR+LLVED A + EAI L + V+W +G A + S+ YD+ +LD+ LP +DG Sbjct: 1 MRILLVEDTADVAEAIVTHLNRIGHTVEWESNGAHASRRL-SESYDLLILDVMLPQQDGF 59 Query: 61 DVLRSIRAKDIPIPLLIITARDGLDDRLQGLDGGADDYVLKPFQMAELLARMRAVLRRKG 120 +L+ +R + P+L++TA +++R++ LD GADDY++KPF EL AR+R +LRR G Sbjct: 60 SLLQQLRTRGHHTPVLMLTACAEVEERVRALDLGADDYLVKPFDFRELDARIRVLLRRSG 119 Query: 121 GIASPLLTNGLLSLDPASKEASLRDGGSIQLSNREFALLQALLMRPGAILSRSELEDRIY 180 G ++ LL LS+D S+ A+L DG I+L+ RE LL+ + RPG I ++ EL DR++ Sbjct: 120 GESTNLLHCANLSIDRKSRSATL-DGQPIELTRREVTLLEIIAARPGRIFNKDELMDRLF 178 Query: 181 GWNEEVESNAVEYLIHSLRRKLGGDI--IKNVRGVGWMV 217 ++ +N+VE + LR+KL I+ +RG+G+ + Sbjct: 179 TVDDNPSANSVEQYVARLRKKLAAAAFEIRTLRGLGYQL 217 >gi|300312680|ref|YP_003776772.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 220 Score = 153 bits (387), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 88/224 (39%), Positives = 138/224 (61%), Gaps = 10/224 (4%) Query: 1 MRVLLVEDDAMIGEAIQAALKDASYAVDWIKDGQIAITTITSQHYDIALL--DLGLPGKD 58 M VLLVEDD ++ + + L + V + +G A+ SQ ++ A+L D+GLPG D Sbjct: 1 MNVLLVEDDPVLTDGLSRVLNSHGFTVHTVNNGNDAL----SQRFNAAVLVLDIGLPGID 56 Query: 59 GLDVLRSIRAKDIPIPLLIITARDGLDDRLQGLDGGADDYVLKPFQMAELLARMRAVLRR 118 G +VLR +RA P+L++TARD + DR+ GL+ GADDY++KPF EL+AR++A++RR Sbjct: 57 GFEVLRRMRAAGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRR 116 Query: 119 KGGIASPLLTNGLLSLDPASKEASLRDGGSIQLSNREFALLQALLMRPGAILSRSELEDR 178 + L G LSLD A+K A + DG I+LS RE+ +L+ L+ ++S+ ++ D Sbjct: 117 SAPQPAQLTVGG-LSLDNATKRADI-DGRKIELSLREWTVLEYLMQHASRVVSKQQIIDA 174 Query: 179 IYGWNEEVESNAVEYLIHSLRRKLG--GDIIKNVRGVGWMVSKA 220 + W E+ NAVE + +R K+ G I+ +RG G+M+ K+ Sbjct: 175 VLPWGEDFTINAVEVYVSRIRLKIADSGVAIRTIRGFGYMLEKS 218 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.139 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 553,124 Number of extensions: 18355 Number of successful extensions: 176 Number of sequences better than 1.0e-08: 43 Number of HSP's gapped: 154 Number of HSP's successfully gapped: 43 Length of query: 221 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 139 Effective length of database: 1,231,600 Effective search space: 171192400 Effective search space used: 171192400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)