BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0078.p (227 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309361|ref|YP_003773453.1| response regulator for cobalt/z... 268 3e-73 gi|300312356|ref|YP_003776448.1| cobalt/zinc/cadmium resistance ... 265 3e-72 gi|300311799|ref|YP_003775891.1| two component heavy metal respo... 248 2e-67 gi|300313818|ref|YP_003777910.1| two component transcription reg... 152 2e-38 gi|300313680|ref|YP_003777772.1| two component response regulato... 144 4e-36 >gi|300309361|ref|YP_003773453.1| response regulator for cobalt/zinc/cadmium resistance transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 235 Score = 268 bits (685), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 136/217 (62%), Positives = 174/217 (80%), Gaps = 2/217 (0%) Query: 1 VVEDEPKTGEYIQRGLTEAGFVVDLAKNGLDGYHLAMTEPYDLVVLDVMLPDVDGWRIVQ 60 +VEDEPK+G+Y++RGLTE+GFVVD + G+DG H A T Y L++LDVMLP ++GW I++ Sbjct: 5 LVEDEPKSGDYLRRGLTESGFVVDWVQTGVDGLHNARTLDYKLIILDVMLPGMNGWDILR 64 Query: 61 SLRDAQKTVPVLFLTARDSVSDRVKGLEMGADDYLVKPFAFSELLARVRTLLRRGSNVVL 120 LR T PVLFLTARD V DRVKGLE+GADDYLVKPFA++ELLARVRTLLRRG + + Sbjct: 65 ELRRTHDT-PVLFLTARDEVEDRVKGLELGADDYLVKPFAYTELLARVRTLLRRGPSREV 123 Query: 121 QDRLTVADLVLDLPRRSASRGGRKLVLTSKEFALLEFLARRRGEVLPRSLIASQIWDINF 180 D + D+VLD+ RR +R G+++ LT+KEFALL L RR GEVL R IASQ+WD+NF Sbjct: 124 -DLIEYDDVVLDVLRRKVTRAGQRIDLTAKEFALLHMLIRRPGEVLSRPQIASQVWDMNF 182 Query: 181 NSDSNVIDVAIRRLRAKVDDGFEHKLILTVRGVGYIL 217 +SD+NV+DVA+RRLRAK+D+GFE KL+ TV G+GY+ Sbjct: 183 DSDTNVVDVAVRRLRAKLDEGFEKKLLHTVWGMGYVF 219 >gi|300312356|ref|YP_003776448.1| cobalt/zinc/cadmium resistance two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 223 Score = 265 bits (676), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 128/219 (58%), Positives = 174/219 (79%), Gaps = 2/219 (0%) Query: 1 VVEDEPKTGEYIQRGLTEAGFVVDLAKNGLDGYHLAMTEPYDLVVLDVMLPDVDGWRIVQ 60 V+ED+PKTG+Y+++GL E+G+ VDLA+NG DG H+A+ + YDLVVLDVMLP +DGW+++ Sbjct: 5 VIEDDPKTGDYLRKGLRESGYAVDLARNGADGLHMALEQDYDLVVLDVMLPGLDGWQVMS 64 Query: 61 SLRDAQKTVPVLFLTARDSVSDRVKGLEMGADDYLVKPFAFSELLARVRTLLRRGSNVVL 120 +LR +++ +PVLFLTARD V DR++GL++GADDYLVKPF+F+EL+ R+RTLLRRG Sbjct: 65 ALR-SKRDLPVLFLTARDHVDDRIRGLQLGADDYLVKPFSFTELVLRIRTLLRRGVTRE- 122 Query: 121 QDRLTVADLVLDLPRRSASRGGRKLVLTSKEFALLEFLARRRGEVLPRSLIASQIWDINF 180 + +ADL LD R +R G + LT+KEF LL L +R+GE L RS+IASQIWD+NF Sbjct: 123 AEVYEIADLQLDHVRHKVTRQGVNIALTNKEFMLLHLLIKRQGEALSRSVIASQIWDMNF 182 Query: 181 NSDSNVIDVAIRRLRAKVDDGFEHKLILTVRGVGYILDD 219 +SD+NV+DVAI+RLRAK+D F+ KLI TVR VGY+ + Sbjct: 183 DSDTNVVDVAIKRLRAKIDAPFDKKLIHTVRSVGYMFSE 221 >gi|300311799|ref|YP_003775891.1| two component heavy metal response transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 230 Score = 248 bits (634), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 123/218 (56%), Positives = 168/218 (77%), Gaps = 2/218 (0%) Query: 1 VVEDEPKTGEYIQRGLTEAGFVVDLAKNGLDGYHLAMTEPYDLVVLDVMLPDVDGWRIVQ 60 +VEDE K EY+ +GLTE G VDLA NG+DG HLA+ YD++VLDVMLP +DG+ +++ Sbjct: 5 IVEDEQKMSEYLCKGLTEQGCAVDLAANGVDGQHLAIEHDYDVIVLDVMLPGLDGFSVLR 64 Query: 61 SLRDAQKTVPVLFLTARDSVSDRVKGLEMGADDYLVKPFAFSELLARVRTLLRRGSNVVL 120 +LR ++T PV+ LTARDSV DR+KGL GADDYL+KPF+F ELLAR++ L RRG Sbjct: 65 ALRKVKET-PVIMLTARDSVEDRIKGLHDGADDYLIKPFSFLELLARLQALTRRG-RAQE 122 Query: 121 QDRLTVADLVLDLPRRSASRGGRKLVLTSKEFALLEFLARRRGEVLPRSLIASQIWDINF 180 +L + DL +DL R A RGG ++ LT+KEFALL +ARR+GE+L ++ IA +WD+NF Sbjct: 123 PAQLRIGDLQIDLLSRKAFRGGLRIDLTAKEFALLAVMARRQGEILSKTAIAELVWDMNF 182 Query: 181 NSDSNVIDVAIRRLRAKVDDGFEHKLILTVRGVGYILD 218 +S++NV++VAI+RLRAK+D FE KL+ TVRG+GY+L+ Sbjct: 183 DSNTNVVEVAIKRLRAKIDAPFEQKLLHTVRGMGYVLE 220 >gi|300313818|ref|YP_003777910.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 224 Score = 152 bits (384), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 87/221 (39%), Positives = 130/221 (58%), Gaps = 6/221 (2%) Query: 1 VVEDEPKTGEYIQRGLTEAGFVVDLAKNGLDGYHLAMTEPYDLVVLDVMLPDVDGWRIVQ 60 +VED + ++ + + +A V+ A NG D L +T+ Y LV+LD+ LP +DG +++ Sbjct: 5 LVEDHIELSRWLAKAMRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGMEVLK 64 Query: 61 SLRDAQKTVPVLFLTARDSVSDRVKGLEMGADDYLVKPFAFSELLARVRTLLRRGSNVVL 120 +R PVL LTAR ++DRV GL MGADDYL KPF EL ARV+ LLRR N Sbjct: 65 RMRARGNRTPVLILTARGGLADRVSGLNMGADDYLAKPFELEELEARVKALLRRSQN--- 121 Query: 121 QDRLTVA--DLVLDLPRRSASRGGRKLVLTSKEFALLEFLARRRGEVLPRSLIASQIWDI 178 + +TV+ L D R+ + GG L LT +E A+LE L R G +P+ + Q++ + Sbjct: 122 NEAVTVSCGALSFDTVSRTFTYGGELLALTPREHAVLEALIVRHGHTVPKEKLFQQVFTL 181 Query: 179 NFNSDSNVIDVAIRRLRAKVD-DGFEHKLILTVRGVGYILD 218 N+ + I++ I RLR K++ +G I T+RG+GY+L Sbjct: 182 EDNASMDAIEIYIHRLRKKLEHEGPGRVGITTLRGLGYLLQ 222 >gi|300313680|ref|YP_003777772.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 218 Score = 144 bits (364), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 82/217 (37%), Positives = 132/217 (60%), Gaps = 5/217 (2%) Query: 1 VVEDEPKTGEYIQRGLTEAGFVVDLAKNGLDGYHLAMTEPYDLVVLDVMLPDVDGWRIVQ 60 +VED+P GE +++GL + GF +D ++G TE Y +++LD+ LP DG +++ Sbjct: 5 LVEDDPMVGEAVRKGLRQDGFAIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGLAVLR 64 Query: 61 SLRDAQKTVPVLFLTARDSVSDRVKGLEMGADDYLVKPFAFSELLARVRTLLRRGSNVVL 120 +LR+ +PVL TARD+V+DRV GL+ GADDYL+KPF EL AR+R L RR + Sbjct: 65 TLRERGNAIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQAGRA- 123 Query: 121 QDRLTVADLVLDLPRRSASRGGRKLVLTSKEFALLEFLARRRGEVLPRSLIASQIWDINF 180 + + V +++L+ + G+ + L+++EF LL+ R G VL R+ + +++ + Sbjct: 124 ESLVQVREVILNPATHEVTVSGKPVNLSAREFTLLQAFMDRPGVVLSRAQLEEKLYGWDD 183 Query: 181 NSDSNVIDVAIRRLRAKVDDGFEHKLILTVRGVGYIL 217 + +SN ++V I LR KV F I VRGVGY++ Sbjct: 184 SIESNAVEVHIHALRKKVGSDF----IKNVRGVGYLV 216 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.140 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 636,979 Number of extensions: 23069 Number of successful extensions: 195 Number of sequences better than 1.0e-08: 39 Number of HSP's gapped: 160 Number of HSP's successfully gapped: 39 Length of query: 227 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 145 Effective length of database: 1,231,600 Effective search space: 178582000 Effective search space used: 178582000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)